WormBase Tree Display for Variation: WBVar00045286
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| WBVar00045286 | Name | Public_name | WBVar00045286 | ||
|---|---|---|---|---|---|
| Other_name | pas20654 | ||||
| haw41734 | |||||
| cewivar00104781 | |||||
| Y55D5A.5c.1:c.-99+1757G>A | |||||
| HGVSg | CHROMOSOME_III:g.3039025C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | gtcgaaaaaatcaaaatttttgccagattttgaatagatttcatgaaaaaaaacgatttttatagaggatttggtgtcaaaaaattgtggaaattattagatttggggaataaaaatccaatttttttcagataaaaaattaaaatctaaagcgaaaaaatggccaaaaaatggcccaaaaaatctacatttttgcccatttttctggagttttcccagaattttttcggtttttggggttaaatttccgggaaaacataatttttttaattttttaattatattttcggaattttaccg | caaaaactcatttttaatggcaaaaaaacatagaaaaatggttcaatcaattgaaaatttcaattttgtccagaattcaatttatatttaattaatatccaatttttcacattttggtagtttatttaccattttttttttgattttggccacaaaatgtacctaaattaacaaaaaaaagttggtaaaactggagattttagtgaaatctgggggattttccgggatttttttttcggtttttggggttaaaattccggaaaaaactcaattttttcagttttttatcgaattttcggc | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (98) | |||||
| Laboratory | QX | ||||
| AX | |||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01444734 | |||
| WBVar00053058 | |||||
| WBVar01261027 | |||||
| WBVar01329534 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5c.1:c.-99+1757G>A | ||||
| Intron_number | 1/20 | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
