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WormBase Tree Display for Variation: WBVar00044576

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Name Class

WBVar00044576NamePublic_nameWBVar00044576
Other_namepas20512
cewivar00104737
Y55D5A.5c.1:c.161+993G>A
Y55D5A.5a.1:c.161+993G>A
Y55D5A.5d.1:c.20+993G>A
HGVSgCHROMOSOME_III:g.3022085C>T
Sequence_detailsSMapS_parentSequenceY55D5A
Flanking_sequencesaagtgatccaaattttgggatatcctttgaatattttttaagttagcaatgcctttcgtacagtagtagaaatcttaaaacaatcgtcaaaaattatagcgaaaacgacggcggagaaaacaactaaattagatatactcgttatttttttcatagaaaaatacagtatgccaattactggaatttgccaacgaaaattcaaattttcgagagccacgcccacaaagtgaccgatttttcggtgtgagaaccaagaaaagggaggagcttaaaaaatgacaaaaaaaccgcaggaagccaacccacaaaatgggcgggacctggaaaaggttcgaaatttccaaaaacttttcggagaaaaccggcaaatcggaaaatcgaaaattttcgacgattccaattacagcgtggtaaaactatccggatttcgaagcgacgcccagaatgtaagagttcgccgaattaggccattttgactcggccacggccggggtagatttacggcgcgtagcggctcacgtggtgtcaaactgtctcatttcggtttgatctacaaaaaatgcgggaatttttccccgtaaaactgtggtgacgtcagca
Mapping_targetY55D5A
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000034From_analysisMillion_mutation_project_reanalysis
WBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004604From_analysisWGS_Pasadena_Quinlan
PersonWBPerson6900
AnalysisWGS_Pasadena_Quinlan
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00000898
TranscriptY55D5A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5a.1:c.161+993G>A
Intron_number3/18
Y55D5A.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5c.1:c.161+993G>A
Intron_number4/20
Y55D5A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55D5A.5d.1:c.20+993G>A
Intron_number1/15
MethodWGS_Pasadena_Quinlan