WormBase Tree Display for Variation: WBVar00044244

WBVar00044244 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00044244
    Other_name: cbs33034
    HGVSg: chrI:g.5858645G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.NA_034
    Flanking_sequences: gtatagtgaaaatgaaccggaaattgaattagactcattccttctctcct tctcttcccgcaccagaagccattttagaagccgagtaggatccataaaa
    Mapping_target: cb25.NA_034
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 336 190 126 68 65 63 46 43 37 26
        AGCT Alu, I 608 154 119 119
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 717 170 113
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 726 274
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 726 274
        AATT Sse9I, TasI, Tsp509I, TspEI 222 174 88 75 65 63 51 46 43 34 34 26 21 21 16 10 6 5
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 336 190 126 102 68 63 46 43 26
        AGCT Alu, I 574 154 119 119 34
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 717 283
        CCNGG Bme1390I, BssKI, BstSCI, MspR9I, ScrFI 1000
        CCWGG BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 222 174 88 86 75 63 51 46 43 34 34 26 21 16 10 6 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00042004
    Transcript: CBG23731.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG23731.1:c.33+574G>A
        Intron_number: 2/5
  Reference: WBPaper00030778
  Remark: Predicted by: Polybayes, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP