WormBase Tree Display for Variation: WBVar00043731
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| WBVar00043731 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00043731 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_I:g.4006198T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F55C7 | |
| Flanking_sequences | cagggcaacaaaactttgcaagtagaaaaagaagagagacaaagaagagagagaagtcgtcgtcgtcgtgcgtctctcactgttttttggtaatgggacacgggaaggcgttcgtcttttgaaacagtaactcttttttactttgttcaaaaggtaacgaaagcagcagaaaaaaaaacaagcacggacccctccaagttcagtgaagcagaatatgattcggaaaccggaaggaaggaaaacgtgggattcaagattcaggattcaaggactgaggagctggtgtggtggttactgagg | ttcccccagtttccggtgcattggaacgctttgaaaaaaaaaacggggaattcctttacgtgttaggaatcgaatttcacagtccgagtgagatcacatctaattcctctacactataaaagaaaaaaactttgaggaaaaattagttcgaaaactttcaaatgaactcgattcgtcattttgctcctatttacttctcgtcgtcctacgcctcccctcctctccctattttctgcttctacttgacttctttttgcttttctcgggacccctcaatcaatttcacctctctctctctat | |||
| Mapping_target | F55C7 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (32) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01431273 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00006805 | |||
| Transcript | F55C7.7i.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7i.1:c.4983-1594A>G | ||||
| Intron_number | 20/25 | ||||
| F55C7.7g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7g.1:c.303-1594A>G | ||||
| Intron_number | 5/10 | ||||
| F55C7.7e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7e.1:c.288-1594A>G | ||||
| Intron_number | 3/8 | ||||
| F55C7.7d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7d.1:c.45-1594A>G | ||||
| Intron_number | 2/7 | ||||
| F55C7.7a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7a.1:c.4983-1594A>G | ||||
| Intron_number | 21/33 | ||||
| F55C7.7f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7f.1:c.420-1594A>G | ||||
| Intron_number | 5/17 | ||||
| F55C7.7h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7h.1:c.288-1594A>G | ||||
| Intron_number | 2/13 | ||||
| F55C7.7c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7c.1:c.303-1594A>G | ||||
| Intron_number | 5/17 | ||||
| F55C7.7i.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F55C7.7i.2:c.4983-1594A>G | ||||
| Intron_number | 20/24 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
