WormBase Tree Display for Variation: WBVar00043451
expand all nodes | collapse all nodes | view schema
| WBVar00043451 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00043451 | |||
| Other_name | pas20287 | ||||
| haw6177 | |||||
| cewivar00073773 | |||||
| C43E11.2b.1:c.-824T>C | |||||
| C43E11.2b.2:c.-824T>C | |||||
| C43E11.2b.3:c.-257T>C | |||||
| CE08680:p.Leu177Pro | |||||
| C43E11.2a.1:c.530T>C | |||||
| HGVSg | CHROMOSOME_I:g.4265744T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | C43E11 | |
| Flanking_sequences | cgtggaacgtcgcctgccgagagaacaatggccaggatccaactctacgaagcatcaaaaaattcacgacagacgattatcgccggttcttaacaaatcgaaaatcaacaacagaacggatgaaggatgcgaaaagattggaaaaacagaaatcaacgaaaaccattgttgatatagaaaatgaattcgaatcggatggagatgatgacaagcaaccaagtgttccactcactaaaacgaaaagctttcaagtttcgaagcccgtccagccgagcttgatacgatcacaaagtggaaatc | ttcgtcttcttcgtctacttcctcatcatcatctaattcatcagatccattatctttcagacttctcacttgtcgaccttttgagcagccaactgttagtatttaaatctaatttttgcagaaaaggattccagaatagaaaaaaatcggcaagtaatagaaaatccaatggaaaattaaaaaaaaaagatttttgaactccctccgaaatgagaactgtccgaccaatcagcgaatagctccgccccagcaatcagatggagtgggcggagttggaagacgcttattggttggctcgcg | |||
| Mapping_target | C43E11 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00152927 | |||
| WBVar01343513 | |||||
| WBVar01281754 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016602 | |||
| Transcript | C43E11.2b.2 | VEP_consequence | 5_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.2b.2:c.-824T>C | ||||
| cDNA_position | 342 | ||||
| Exon_number | 1/4 | ||||
| C43E11.2b.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.2b.1:c.-824T>C | ||||
| cDNA_position | 532 | ||||
| Exon_number | 3/6 | ||||
| C43E11.2a.1 (12) | |||||
| C43E11.2b.3 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.2b.3:c.-257T>C | ||||
| cDNA_position | 339 | ||||
| Exon_number | 1/5 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
