WormBase Tree Display for Variation: WBVar00035831
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| WBVar00035831 | Name | Public_name | WBVar00035831 | ||
|---|---|---|---|---|---|
| Other_name | pas18763 | ||||
| cewivar00078808 | |||||
| W09B6.2c.1:c.522T>C | |||||
| CE27222:p.Phe375= | |||||
| CE51196:p.Phe301= | |||||
| CE51162:p.Phe69= | |||||
| W09B6.2b.1:c.903T>C | |||||
| W09B6.2a.1:c.1125T>C | |||||
| CE51176:p.Phe174= | |||||
| W09B6.2d.1:c.207T>C | |||||
| HGVSg | CHROMOSOME_II:g.1131928T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | W09B6 | |
| Flanking_sequences | aagattcttgaacttttcggcataaaatctttgaaaatcgtgaatttcagtaaaaaattcaaatttccagttaatcgcgtgctgcaaacgcgccccacggccaatttatcagtggggcgcacttgtagcatgcgggcggcgggaaatttgaatttttgagttaaaaattcgatttttcaacgattttcgtcattttcaaggcattttttttgaattttttaaaatttccagagaccaagtggacaaacacgacgccggccgtaccgcccgtcgccttttcgatttttcgcatcgaatttt | cgcgacacgggctcctcgttctcgatgatctacggaaccgtccatatccttcaggaattcgtggcgggacccaaaaaagccgcttggctgctcacggagctcggcgagacgaatgcgcggtgcaaatcgcacatcgagtcgggctcacggatcggagcatcgcaactgtcgattcaggaggctcagaagcttaatcagcagattttggtaggtgtaaacgcgctctaatgagaaaatcgccgaattccggcgattttctcattggagcgcaattgctaaccttttttttttcagaaatgt | |||
| Mapping_target | W09B6 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (64) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01293930 | |||
| WBVar01359724 | |||||
| WBVar01435776 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006387 | |||
| Transcript | W09B6.2c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | W09B6.2c.1:c.522T>C | ||||
| HGVSp | CE51176:p.Phe174= | ||||
| cDNA_position | 522 | ||||
| CDS_position | 522 | ||||
| Protein_position | 174 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| W09B6.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W09B6.2b.1:c.903T>C | ||||
| HGVSp | CE51196:p.Phe301= | ||||
| cDNA_position | 903 | ||||
| CDS_position | 903 | ||||
| Protein_position | 301 | ||||
| Exon_number | 6/7 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| W09B6.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W09B6.2a.1:c.1125T>C | ||||
| HGVSp | CE27222:p.Phe375= | ||||
| cDNA_position | 1141 | ||||
| CDS_position | 1125 | ||||
| Protein_position | 375 | ||||
| Exon_number | 8/10 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| W09B6.2d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W09B6.2d.1:c.207T>C | ||||
| HGVSp | CE51162:p.Phe69= | ||||
| cDNA_position | 207 | ||||
| CDS_position | 207 | ||||
| Protein_position | 69 | ||||
| Exon_number | 3/4 | ||||
| Codon_change | ttT/ttC | ||||
| Amino_acid_change | F | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
