WormBase Tree Display for Variation: WBVar00033911
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| WBVar00033911 | Name | Public_name | WBVar00033911 | ||
|---|---|---|---|---|---|
| Other_name | pas18379 | ||||
| cewivar00104658 | |||||
| Y55D5A.5c.1:c.5415+36G>A | |||||
| Y55D5A.5g.1:c.1647+36G>A | |||||
| Y55D5A.5e.1:c.4941+36G>A | |||||
| Y55D5A.5d.1:c.5028+36G>A | |||||
| Y55D5A.5f.1:c.2739+36G>A | |||||
| Y55D5A.5a.1:c.5169+36G>A | |||||
| HGVSg | CHROMOSOME_III:g.2998626C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | aaaatgtcgtcgaaaataagctcaaaacgacgttttttttccaggttttgatagatttgttgaaaattcaaaaaaaaatgtacgaaaagtctaaacattttcagaaatttctgaaaaatttagaaacattaaaaattagaaaatttcaattatcaaattaaaaaacgaatttttcattttttttaaattataaacgctggaaaaatgtacgtttttttttacaattttagctgaaaatttggggattttctcgattttttgtcacgaaaaaagtctgaaaatgcacacttttcaggggct | tttttcataaaaatttcaatattctgaagcagtaccgtatccatggatgatatctctttttcaacataatcatcatcatttaaatgtccacttccaacaccatcagttaatcgtactgcttcaccgaaaccggctcctcgttcatttgaaccaccacgatttgttaggcaatatggaccaccacctgtgtaacttgatgttgatgcaccagtatttcgtcgctgaaaaatgaatttgggtctcgaaacgattgataagcgaaaagatgaaagatgaagaaaagatgaagaaaagatgaaa | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5g.1:c.1647+36G>A | ||||
| Intron_number | 2/3 | ||||
| Y55D5A.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5e.1:c.4941+36G>A | ||||
| Intron_number | 13/14 | ||||
| Y55D5A.5f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5f.1:c.2739+36G>A | ||||
| Intron_number | 6/7 | ||||
| Y55D5A.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5a.1:c.5169+36G>A | ||||
| Intron_number | 16/18 | ||||
| Y55D5A.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5c.1:c.5415+36G>A | ||||
| Intron_number | 18/20 | ||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5d.1:c.5028+36G>A | ||||
| Intron_number | 14/15 | ||||
| Method | WGS_Pasadena_Quinlan |
