WormBase Tree Display for Variation: WBVar00031376
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| WBVar00031376 | Name | Public_name | WBVar00031376 | ||
|---|---|---|---|---|---|
| Other_name | pas17872 | ||||
| haw5884 | |||||
| haw116511 | |||||
| cewivar00073421 | |||||
| F53F10.2a.3:c.624-14G>A | |||||
| F53F10.2a.2:c.624-14G>A | |||||
| F53F10.2a.5:c.624-14G>A | |||||
| F53F10.2c.1:c.*933-14G>A | |||||
| F53F10.2a.4:c.624-14G>A | |||||
| F53F10.2a.1:c.624-14G>A | |||||
| HGVSg | CHROMOSOME_I:g.3832915G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F53F10 | |
| Flanking_sequences | agagcagttttctgctcacaactgatgactcgtaaagctatcaaaaatgctgttttggctggatgctccacttttgttgtagaaagcgagaaacaagttaccgatgtgatgaatgcatcaccagaagctgaaatcatcctagctgtctgtcttccatactcgactggagaagttccattcggatgctcagttgatgagattgaggagattctagatatggctcatcttcttggtgcaaatgttaccggaatctagtaagttaaactttttttaaaatttccaaatcatatcttaacaaaa | tacatattttcagtctcgaacttggacttcgtgccaccctggaggactacatcacatcagttcacgatgctcgctcgatcttcgaaactgctgatcaaaagttcctgacactccgtcgtgtctgctttgggaatctctctgttccaactggagccgatggagctgtgaataatgaattcatgtcattttgcaactctctcaacaatgtcattgatgacctatttgaatctaatattgatttctctgcaagcatcggacgtttccttgtgacaaatgcattcacattgtgcacaaatgtta | |||
| Mapping_target | F53F10 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00152634 | |||
| WBVar01343095 | |||||
| WBVar01281038 | |||||
| WBVar00536376 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018764 | |||
| Transcript | F53F10.2c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2c.1:c.*933-14G>A | ||||
| Intron_number | 6/6 | ||||
| F53F10.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.1:c.624-14G>A | ||||
| Intron_number | 5/7 | ||||
| F53F10.2a.5 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.5:c.624-14G>A | ||||
| Intron_number | 4/6 | ||||
| F53F10.2a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.3:c.624-14G>A | ||||
| Intron_number | 4/6 | ||||
| F53F10.2a.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.4:c.624-14G>A | ||||
| Intron_number | 5/7 | ||||
| F53F10.2a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.2:c.624-14G>A | ||||
| Intron_number | 4/6 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
