WormBase Tree Display for Variation: WBVar00031366
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| WBVar00031366 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00031366 | |||
| Other_name | pas17870 | ||||
| haw5883 | |||||
| cewivar00073419 | |||||
| F53F10.2a.1:c.-938T>C | |||||
| F53F10.2a.2:c.-997T>C | |||||
| HGVSg | CHROMOSOME_I:g.3830831T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F53F10 | |
| Flanking_sequences | tacgcaatgctcttttctgaatttcgttgtttgttccccataaaaataaaagttctaaacaccatcaaaacaccggtgttcgtgtttttcggtcgctttttttcgatttttgaactgtgtctgttgccgcctccttctagggacgaacggaaaacaactgactctctgacatcatcacaggatatctttaagaagctgcttccctctttttctttttcttgtgtgtgcgttattctagaaaattcaaaaagtttgtgtgacgtcgttcctcgtgacactcttcttatcatttagaactgc | tgctctatacagttttctgattacaagtcatctctttctttgtctactttcctaattctgacaggcattattagcattttctatagaaagaacatcacataacgatggttacgtggaagtttaaaggtatttcaacagaaaatcgataaatgttgaatttttccacgcatcaaaatcaataaaataaaattatattgtgtcggttatcttacgtttcgtattctcttcctcctaatttctccattaacaccatcaatcaatccaatcaataatttttccaaatagaatccgtgccccgtc | |||
| Mapping_target | F53F10 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00152633 | |||
| WBVar01343094 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018764 | |||
| Transcript | F53F10.2a.1 | VEP_consequence | 5_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.1:c.-938T>C | ||||
| cDNA_position | 270 | ||||
| Exon_number | 1/8 | ||||
| F53F10.2a.2 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53F10.2a.2:c.-997T>C | ||||
| cDNA_position | 1317 | ||||
| Exon_number | 1/7 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
