WormBase Tree Display for Variation: WBVar00031006
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| WBVar00031006 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00031006 | |||
| Other_name | pas17798 | ||||
| haw5832 | |||||
| cewivar00073357 | |||||
| F21A9.1a.1:c.-57T>A | |||||
| F21A9.1a.2:c.-57T>A | |||||
| F21A9.1b.1:c.425+56T>A | |||||
| HGVSg | CHROMOSOME_I:g.3712116T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F21A9 | |
| Flanking_sequences | actccactaaacttctcaacatcctccccatatggccttgcaactcctgatacagattgtgaagtaatcgacacgctgtgcccacaactcactcaaatattccatgtcagtgtaaacggtctaccaaaattagtaacctatgaggaattaaaagacaatgacactatggaaatcgtagaagaagctggttatgttggggcatggcctggttactgtggtacatcggatggagctctcgtcgaaatgttctccccgattcttaaaacattccgatatgctacgtcaaatgaggatattctc | aggcgagatggaatgcagatcgacaattttggaggcctactaaagtatttgggtacatgtttaatgcgagtaaccctgacagaactgtgtaagttttaaatttgaaaatttcaaaaattaagttaaaatttcagaaactacccgtttaattccatgcggccattggagaacgtggtgtttgttagttattttctattttttctatttttgcccggaaaagtaatattcaaattattattttgttttagaacaaaattctccttcgactccgtccaatattgcgtgtaagaaaccctgaag | |||
| Mapping_target | F21A9 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00152582 | |||
| WBVar01343031 | |||||
| WBVar01280850 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017650 | |||
| Transcript | F21A9.1a.2 | VEP_consequence | 5_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1a.2:c.-57T>A | ||||
| cDNA_position | 620 | ||||
| Exon_number | 3/8 | ||||
| F21A9.1a.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1a.1:c.-57T>A | ||||
| cDNA_position | 1592 | ||||
| Exon_number | 2/7 | ||||
| F21A9.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1b.1:c.425+56T>A | ||||
| Intron_number | 3/5 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
