WormBase Tree Display for Variation: WBVar00030516
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| WBVar00030516 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00030516 | |||
| Other_name | pas17700 | ||||
| cewivar00103823 | |||||
| CE42487:p.Leu405= | |||||
| Y71H2B.5.1:c.1215T>C | |||||
| HGVSg | CHROMOSOME_III:g.2613484T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71H2B | |
| Flanking_sequences | cgaatggtatttgaaagaagttgaacatcgagaagaaggtggcactgctgatgcagttggagctgtccgattggcaatggctgtgaaaatgaaacgatcaattggagaggataccattaaaaatctcgaatcctcaatttcacatctcgtccttcagaagatcagaaccattgagaatcttgtacttctcggtccatcggtcgtagatcatcgtctcccagtattctcattcctaattcgtgatcctcaaagtcaactgttcttccatcataattatatttctgttctgttaaatgatct | tttggaattcaaactcgtgctggatgtatgtgtgctggtccgtattctcagaagcttctcggaatcgatgaagagctgtcacagagatttgtgagcgcaattcaagaatcaccagatctcgatagaacacacctccggcggcaagctgaatactcgcaacaggaattcctgagacctggattcacgagaatctcgtttccttattttttcaagatggcggaagtcgatgagattttggaggctattcgatttattgcaaaacatgcggccgactttttgcacttggtaggagccttgtgt | |||
| Mapping_target | Y71H2B | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (23) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01444482 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00022195 | |||
| Transcript | Y71H2B.5.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y71H2B.5.1:c.1215T>C | ||||
| HGVSp | CE42487:p.Leu405= | ||||
| cDNA_position | 1217 | ||||
| CDS_position | 1215 | ||||
| Protein_position | 405 | ||||
| Exon_number | 5/12 | ||||
| Codon_change | ctT/ctC | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
