WormBase Tree Display for Variation: WBVar00029534

WBVar00029534 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00029534
    Other_name: cbs24950
      cb24950 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.9338467T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: atatttgattagtgattgctcacat tataactaatttcaccaacaagcgg
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (14)
      Polymorphic_strain_digest (14)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034896
    Transcript: CBG14372a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14372a.1:c.430-280A>G
        Intron_number: 6/8
      CBG14372b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14372b.1:c.448-280A>G
        Intron_number: 6/8
      CBG14372c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14372c.1:c.448-526A>G
        Intron_number: 6/7
      CBG14372d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14372d.1:c.430-526A>G
        Intron_number: 6/7
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP