WormBase Tree Display for Variation: WBVar00029314
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| WBVar00029314 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00029314 | ||||
| Other_name | cbs24890 | |||||
| cb24890 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrX:g.8826155C>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gtgaagatcaattgggaaaaggcgt | aaaaatattaaattcatcgatgttc | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | G | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 812 188 | ||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 504 496 | ||||
| GTAC | AfaI, Csp6I, RsaI | 717 186 68 29 | ||||
| TTAA | MseI, Tru1I, Tru9I | 233 213 133 103 103 89 81 45 | ||||
| CAYNNNNRTG | MslI, SmiMI | 381 329 180 110 | ||||
| WGTACW | TatI | 744 188 68 | ||||
| Polymorphic_strain_digest | TGTACA | AauI, Bsp1407I, BsrGI, SspBI | 1000 | |||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 1000 | ||||
| GTAC | AfaI, Csp6I, RsaI | 717 254 29 | ||||
| TTAA | MseI, Tru1I, Tru9I | 233 213 133 103 94 89 81 45 9 | ||||
| CAYNNNNRTG | MslI, SmiMI | 381 329 290 | ||||
| WGTACW | TatI | 744 256 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034822 | ||||
| Transcript | CBG14266.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG14266.1:c.843C>A | |||||
| HGVSp | CBP18020.1:p.Val281%3D | |||||
| cDNA_position | 871 | |||||
| CDS_position | 843 | |||||
| Protein_position | 281 | |||||
| Exon_number | 4/5 | |||||
| Codon_change | gtG/gtA | |||||
| Amino_acid_change | V | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
