WormBase Tree Display for Variation: WBVar00029264
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| WBVar00029264 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00029264 | ||||
| Other_name | cbs24877 | |||||
| cb24877 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrX:g.8507435A>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | gaagaaccaagataattgtactcga | gtgcatttataggatgggcttctaa | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTTAAA | AhaIII, DraI | 1000 | ||
| CYCGRG | Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII | 1000 | ||||
| WCCGGW | BetI, BsaWI | 1000 | ||||
| CTCGAG | BssHI, PaeR7I, SciI, Sfr274I, SlaI, TliI, XhoI | 1000 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 262 250 146 132 127 77 6 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 441 323 125 62 43 6 | ||||
| GTYRAC | HincII, HindII | 537 417 46 | ||||
| CAC | HindI | 192 129 127 109 98 47 42 41 37 37 30 30 25 22 14 10 5 3 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 495 218 183 104 | ||||
| CTYRAG | SmlI | 732 268 | ||||
| Polymorphic_strain_digest | TTTAAA | AhaIII, DraI | 547 453 | |||
| CYCGRG | Ama87I, AvaI, BcoI, BsiHKCI, BsoBI, Eco88I, Nli3877I, NspIII | 505 495 | ||||
| WCCGGW | BetI, BsaWI | 688 312 | ||||
| CTCGAG | BssHI, PaeR7I, SciI, Sfr274I, SlaI, TliI, XhoI | 505 495 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 394 250 146 127 77 6 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 441 323 91 62 43 34 6 | ||||
| GTYRAC | HincII, HindII | 583 417 | ||||
| CAC | HindI | 192 129 127 109 98 47 41 38 37 37 30 30 25 22 14 10 5 4 3 2 | ||||
| ACGT | HpyCH4IV, MaeII, TaiI, TscI | 378 218 183 117 104 | ||||
| CTYRAG | SmlI | 505 268 227 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00034780 | ||||
| WBGene00034781 | ||||||
| Transcript | CBG14206.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG14206.1:c.*780+444A>C | |||||
| Intron_number | 9/12 | |||||
| CBG14207.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG14207.1:c.364-444T>G | |||||
| Intron_number | 3/3 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
