WormBase Tree Display for Variation: WBVar00029054
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WBVar00029054 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00029054 | ||||
Other_name | cbs24812 | |||||
cb24812 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | ctaaaaatgcactttcaaaataagt | aattctggaaaacgaaggagggaaa | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CCGC | AciI | 1000 | ||
RAATTY | AcsI, ApoI, XapI | 302 213 198 91 69 64 43 10 10 | ||||
GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 529 471 | ||||
AGATCT | BglII | 529 471 | ||||
GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 996 4 | ||||
RGCY | CviJI, CviTI | 450 171 158 89 71 30 18 10 3 | ||||
GAATTC | EcoRI, FunII | 302 287 213 198 | ||||
CAC | HindI | 117 109 100 88 73 53 48 48 45 41 35 32 30 29 25 25 22 15 12 11 9 9 7 6 5 3 3 | ||||
TTAA | MseI, Tru1I, Tru9I | 651 179 170 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 216 129 120 84 84 78 75 69 64 43 11 10 10 7 | ||||
Polymorphic_strain_digest | CCGC | AciI | 800 200 | |||
RAATTY | AcsI, ApoI, XapI | 216 213 198 91 86 69 64 43 10 10 | ||||
GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 471 454 75 | ||||
AGATCT | BglII | 1000 | ||||
GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 914 82 4 | ||||
RGCY | CviJI, CviTI | 450 171 158 71 67 30 22 18 10 3 | ||||
GAATTC | EcoRI, FunII | 485 302 213 | ||||
CAC | HindI | 117 109 106 88 73 62 53 53 48 48 41 35 30 25 25 22 12 11 9 9 7 6 5 3 3 | ||||
TTAA | MseI, Tru1I, Tru9I | 467 184 179 170 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 129 120 117 99 86 84 84 78 69 64 43 10 10 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |