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WormBase Tree Display for Variation: WBVar00029054

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Name Class

WBVar00029054EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00029054
Other_namecbs24812
cb24812Paper_evidenceWBPaper00055507
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesctaaaaatgcactttcaaaataagtaattctggaaaacgaaggagggaaa
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCCGCAciI1000
RAATTYAcsI, ApoI, XapI302 213 198 91 69 64 43 10 10
GATCBfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI529 471
AGATCTBglII529 471
GGNNCCBscBI, BspLI, NlaIV, PspN4I996 4
RGCYCviJI, CviTI450 171 158 89 71 30 18 10 3
GAATTCEcoRI, FunII302 287 213 198
CACHindI117 109 100 88 73 53 48 48 45 41 35 32 30 29 25 25 22 15 12 11 9 9 7 6 5 3 3
TTAAMseI, Tru1I, Tru9I651 179 170
AATTSse9I, TasI, Tsp509I, TspEI216 129 120 84 84 78 75 69 64 43 11 10 10 7
Polymorphic_strain_digestCCGCAciI800 200
RAATTYAcsI, ApoI, XapI216 213 198 91 86 69 64 43 10 10
GATCBfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI471 454 75
AGATCTBglII1000
GGNNCCBscBI, BspLI, NlaIV, PspN4I914 82 4
RGCYCviJI, CviTI450 171 158 71 67 30 22 18 10 3
GAATTCEcoRI, FunII485 302 213
CACHindI117 109 106 88 73 62 53 53 48 48 41 35 30 25 25 22 12 11 9 9 7 6 5 3 3
TTAAMseI, Tru1I, Tru9I467 184 179 170
AATTSse9I, TasI, Tsp509I, TspEI129 120 117 99 86 84 84 78 69 64 43 10 10 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP