WormBase Tree Display for Variation: WBVar00029044
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| WBVar00029044 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00029044 | ||||
| Other_name | cbs24810 | |||||
| cb24810 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | ||||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
| Flanking_sequences | atactctgtgttgatggtgatgatg | tgaaacgtaatgtattctagctaca | ||||
| Mapping_target | cb25.fpc3857a | |||||
| Type_of_mutation | Substitution | G | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 1000 | ||
| RAATTY | AcsI, ApoI, XapI | 311 198 135 91 69 69 64 43 10 10 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 615 385 | ||||
| AGATCT | BglII | 615 385 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 1000 | ||||
| RGCY | CviJI, CviTI | 450 158 89 71 60 55 39 30 30 18 | ||||
| GAATTC | EcoRI, FunII | 446 287 198 69 | ||||
| CAC | HindI | 173 109 100 88 78 73 48 48 45 32 30 29 25 25 22 15 12 11 9 9 7 4 2 2 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 795 170 35 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 216 135 120 84 84 78 69 69 64 43 11 10 10 7 | ||||
| Polymorphic_strain_digest | CCGC | AciI | 656 344 | |||
| RAATTY | AcsI, ApoI, XapI | 216 198 135 95 91 69 69 64 43 10 10 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 615 310 75 | ||||
| AGATCT | BglII | 1000 | ||||
| GGNNCC | BscBI, BspLI, NlaIV, PspN4I | 774 226 | ||||
| RGCY | CviJI, CviTI | 450 158 71 67 60 55 39 30 30 22 18 | ||||
| GAATTC | EcoRI, FunII | 485 446 69 | ||||
| CAC | HindI | 173 109 106 88 78 73 62 53 48 48 30 25 25 22 12 11 9 9 7 4 2 2 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 467 328 170 35 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 135 120 117 99 95 84 78 69 69 64 43 10 10 7 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00250292 | ||||
| Transcript | CBG29591 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
