WormBase Tree Display for Variation: WBVar00029041
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| WBVar00029041 | Name | Public_name | WBVar00029041 | ||
|---|---|---|---|---|---|
| Other_name | pas17405 | ||||
| haw40739 | |||||
| haw141679 | |||||
| cewivar00103399 | |||||
| W04B5.3c.1:c.832-57T>A | |||||
| W04B5.3b.1:c.832-57T>A | |||||
| W04B5.3a.1:c.832-57T>A | |||||
| HGVSg | CHROMOSOME_III:g.2421615T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | W04B5 | |
| Flanking_sequences | tcaacaggcaccacctcctcctctttctactttaccggcggctcgcagggattctcgaatcatccgtacccacttccgggattaatcgataattcgacacatgcatcacagcagaatcccgttggaacattaccaccacaaacttccatgccaagtgcaccgcctatcactcaggctccgccgactccggcgggagctgcgtacacctcgccatataccagcgtccctgtaggttttttgaaatttttgagtgaaaatttgagtttttcgagtttttcgctgctaggaacttttttttcg | agattttagaagcagcaaattccaaattttaaaccctgaaaaattgagattttcagatgccacagcctccgtcttccgttccactttcgtatacacctgcgccaactccatcggtaccatatacagtggtaaatgttgagaaaatgagaaaactttgagaatttttgaatttgaaacaaaaacaataatttttgaactttttgaaaaaaaaatttggaaattttttttttttgaaaatttttttccatcaaaaaattctaaaaattaccattttacgctgaaactcaaatttttttgccg | |||
| Mapping_target | W04B5 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (30) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01259617 | |||
| WBVar00561544 | |||||
| WBVar00048083 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021020 | |||
| Transcript | W04B5.3a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W04B5.3a.1:c.832-57T>A | ||||
| Intron_number | 8/13 | ||||
| W04B5.3c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W04B5.3c.1:c.832-57T>A | ||||
| Intron_number | 8/12 | ||||
| W04B5.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W04B5.3b.1:c.832-57T>A | ||||
| Intron_number | 7/11 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
