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WormBase Tree Display for Variation: WBVar00029036

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Name Class

WBVar00029036NamePublic_nameWBVar00029036
Other_namepas17404
uCE3-752
haw40730
haw141673
cewivar00103388
W04B5.3c.1:c.22-14T>A
W04B5.3b.1:c.22-14T>A
W04B5.3a.1:c.22-14T>A
HGVSgCHROMOSOME_III:g.2419122T>A
Sequence_detailsSMapS_parentSequenceW04B5
Flanking_sequencesatcgtgaaaatgcgctccaatgcaactatcgcaatttttcacgatatcgcaatacacgtggtgccagttgtcccattacggtttgatctacaaaaaatgcgggaactttttgcccaaaaaaaaatgtgacgtcagcacgttcttaaccatgcaaaatcagttgaaaactctgcgtctcttctcccgcatttttcggagatcaaaccgaaaaaagacattctgacaccacgttgcaacacaaaagcagtagaaattgttgttgcagttgcaattgcgctctgacgcaaattttcgacaaagcaataatttccagacaatgccgttccgtcgggacattccagccggctttccagtcgggaccacatttaaattgaccggaaaaccctacgaggacattcagaagagcattttcgtgattttcaacacaaataatggagatcaggctcttcgcgtcgagcttgtgctcgttcaaccgtctaaagtgattcagaatttttatttggctgatcgagtaaaattttagcgggaaaaaagactataaatcgatgattttccgtccgaaattggaaaaaaaatctataactttcagaaaaattggag
Mapping_targetW04B5
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (29)
LaboratoryAX
RW
PersonWBPerson6900
WBPerson4037
WBPerson1562
AnalysisWGS_Pasadena_Quinlan
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
SNP_Swan
WGS_Hawaiian_Waterston
HistoryAcquires_mergeWBVar01259604
WBVar00269612
WBVar01327726
WBVar00561538
WBVar00048038
StatusLive
AffectsGeneWBGene00021020
TranscriptW04B5.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3a.1:c.22-14T>A
Intron_number2/13
W04B5.3c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3c.1:c.22-14T>A
Intron_number2/12
W04B5.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScW04B5.3b.1:c.22-14T>A
Intron_number1/11
ReferenceWBPaper00038208
WBPaper00037807
WBPaper00005369
MethodWGS_Pasadena_Quinlan