WormBase Tree Display for Variation: WBVar00029036
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WBVar00029036 | Name | Public_name | WBVar00029036 | ||
---|---|---|---|---|---|
Other_name | pas17404 | ||||
uCE3-752 | |||||
haw40730 | |||||
haw141673 | |||||
cewivar00103388 | |||||
W04B5.3c.1:c.22-14T>A | |||||
W04B5.3b.1:c.22-14T>A | |||||
W04B5.3a.1:c.22-14T>A | |||||
HGVSg | CHROMOSOME_III:g.2419122T>A | ||||
Sequence_details | SMap | S_parent | Sequence | W04B5 | |
Flanking_sequences | atcgtgaaaatgcgctccaatgcaactatcgcaatttttcacgatatcgcaatacacgtggtgccagttgtcccattacggtttgatctacaaaaaatgcgggaactttttgcccaaaaaaaaatgtgacgtcagcacgttcttaaccatgcaaaatcagttgaaaactctgcgtctcttctcccgcatttttcggagatcaaaccgaaaaaagacattctgacaccacgttgcaacacaaaagcagtagaaattgttgttgcagttgcaattgcgctctgacgcaaattttcgacaaag | caataatttccagacaatgccgttccgtcgggacattccagccggctttccagtcgggaccacatttaaattgaccggaaaaccctacgaggacattcagaagagcattttcgtgattttcaacacaaataatggagatcaggctcttcgcgtcgagcttgtgctcgttcaaccgtctaaagtgattcagaatttttatttggctgatcgagtaaaattttagcgggaaaaaagactataaatcgatgattttccgtccgaaattggaaaaaaaatctataactttcagaaaaattggag | |||
Mapping_target | W04B5 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (29) | |||||
Laboratory | AX | ||||
RW | |||||
Person | WBPerson6900 | ||||
WBPerson4037 | |||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar01259604 | |||
WBVar00269612 | |||||
WBVar01327726 | |||||
WBVar00561538 | |||||
WBVar00048038 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021020 | |||
Transcript | W04B5.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3a.1:c.22-14T>A | ||||
Intron_number | 2/13 | ||||
W04B5.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3c.1:c.22-14T>A | ||||
Intron_number | 2/12 | ||||
W04B5.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | W04B5.3b.1:c.22-14T>A | ||||
Intron_number | 1/11 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
WBPaper00005369 | |||||
Method | WGS_Pasadena_Quinlan |