WormBase Tree Display for Variation: WBVar00027336
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| WBVar00027336 | Name | Public_name | WBVar00027336 | ||
|---|---|---|---|---|---|
| Other_name | pas17064 | ||||
| cewivar00103001 | |||||
| Y48G9A.4b.1:c.654C>G | |||||
| CE54251:p.Leu218= | |||||
| Y48G9A.4a.1:c.399C>G | |||||
| CE32979:p.Leu133= | |||||
| HGVSg | CHROMOSOME_III:g.2137373C>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y48G9A | |
| Flanking_sequences | tttgtcgtagaatctggtgtatcgcgatgtttgcgtacttttagcgctaccgtaacccgcgaaattcaaattttccgttagaaacccgaagaaaactaatttttaatgcaaaaaattgtgctaaattcgaatttggtggtaattttccaaattttctaccggaaaaagctgaaattttcagattttttgctctaaaaattgcacattttttcaattttccctaattttcagctgggttttcgaattcctgaatactccaaatcttggtctccggaagcttgttgactacatgagaactct | ctcgcagactgtgctccatctgtcccatctacgtcatcagggctcccggcggggttcctgaactccaccgccaactcgtcagtgggcgccaacaataatcactcgtcgctaaacgaatcgccgagccataattccagctatgaaatgagcacgacgacgacggcaaacacgtcgaattcgttcgatgctacagcgaatttgctgaaaaaaggtggaaaatttggcgaaaaatcgacgtttttgagctttttatgctaattttcgggttccccgtcgaattttacatcgaaaatggctctt | |||
| Mapping_target | Y48G9A | ||||
| Type_of_mutation | Substitution | C | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (103) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01258914 | |||
| WBVar01444207 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021698 | |||
| Transcript | Y48G9A.4b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y48G9A.4b.1:c.654C>G | ||||
| HGVSp | CE54251:p.Leu218= | ||||
| cDNA_position | 659 | ||||
| CDS_position | 654 | ||||
| Protein_position | 218 | ||||
| Exon_number | 6/16 | ||||
| Codon_change | ctC/ctG | ||||
| Amino_acid_change | L | ||||
| Y48G9A.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y48G9A.4a.1:c.399C>G | ||||
| HGVSp | CE32979:p.Leu133= | ||||
| cDNA_position | 399 | ||||
| CDS_position | 399 | ||||
| Protein_position | 133 | ||||
| Exon_number | 3/13 | ||||
| Codon_change | ctC/ctG | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
