Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00025059

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00025059EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00025059
Other_namecbs21916
cb21916Paper_evidenceWBPaper00055507
HGVSgchrX:g.11513991C>A
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesgttgcctctatttcttttctatcctgcctcatagaactccctaaatgcgg
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestGTACAfaI, Csp6I, RsaI412 308 264 16
CACHindI177 164 120 111 58 51 49 49 48 44 42 24 21 18 13 11
Polymorphic_strain_digestGTACAfaI, Csp6I, RsaI720 264 16
CACHindI177 164 120 65 58 51 49 49 48 46 44 42 24 21 18 13 11
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00035221
TranscriptCBG14830.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG14830.1:c.*781+1198C>A
Intron_number17/32
CBG14830.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG14830.2:c.*781+1198C>A
Intron_number16/31
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP