WormBase Tree Display for Variation: WBVar00023996
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| WBVar00023996 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00023996 | |||
| Other_name | pas16396 | ||||
| cewivar00071668 | |||||
| T16H5.1a.1:c.514-30C>T | |||||
| T16H5.1b.1:c.466-30C>T | |||||
| T16H5.1a.2:c.514-30C>T | |||||
| HGVSg | CHROMOSOME_I:g.2454924G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | T16H5 | |
| Flanking_sequences | tccccggaattcaaaaattccgcattttacgaacctgaaatccgaaaaacaagaaatcgctacttttgaggcacgcattgagtatcaaaaattgtgccaccacattcatcgagtacagtaatttcgtgaaactatgtaaaatcgataaacactgtccggaaagaaatcttgaaaatttgattcgagcaatccatccacgggctcgaattcttccgttcggagattgtaggtcgaggttgtccacgaaatttgtggtgattgcttccacggcctaaaacttcagaaattagggaaaactag | ccaccggtggtcatcggttatgggtttttcggaattctcggccaccgaactacgcgacatggcctagaaacccaaaaatctcccagaaaaataccttttgccgatcagaagcatccaaaagtgcttgaccatcgcacgccgcgttgattaatgtttgaatgtttagtcctgaaattttttagaagtttttaggggtttttttaaatggaagagtttttcaatatcctcggccacgggggaaatcgcaaggaatttcgacttactattagttttgtgatcatattaacaaagtctgctaag | |||
| Mapping_target | T16H5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (44) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01430641 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00002141 | |||
| Transcript | T16H5.1a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T16H5.1a.2:c.514-30C>T | ||||
| Intron_number | 5/8 | ||||
| T16H5.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T16H5.1a.1:c.514-30C>T | ||||
| Intron_number | 4/7 | ||||
| T16H5.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T16H5.1b.1:c.466-30C>T | ||||
| Intron_number | 3/6 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
