WormBase Tree Display for Variation: WBVar00022336
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| WBVar00022336 | Name | Public_name | WBVar00022336 | ||
|---|---|---|---|---|---|
| Other_name | pas16064 | ||||
| cewivar00022488 | |||||
| F53A3.4d.1:c.-1671-793A>T | |||||
| F53A3.4b.1:c.3196-793A>T | |||||
| F53A3.4c.1:c.3196-793A>T | |||||
| F53A3.4a.1:c.3196-793A>T | |||||
| HGVSg | CHROMOSOME_III:g.1926884A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F53A3 | |
| Flanking_sequences | gctctctgcgtctctcgaaccgtctgcatctctaaccagctctcctgatctctcgtcgcctcctctcctcgtctttcgcccatttttccttttcctttctcacccggttgtcgtcgtcgtcgtcattttgctgctgcctggcgctgtgtcgattctctcgttttttttttttttttttttcgtttttttctccttctcccgagatagtgtagtctttggacgggtttccgctggaaattgagttttttaggtaccgatttttgatgattgacccgcattatcagtccttttcactgtgaa | ttcgaggaaatcacgtttttctcgtctattttcgaattccccgtcatttttcaccccgggagctcaattttctgactgttagcttcaaatttaagaaaattgtgcatttttgcgtaagagatccccggtgtttgcgtatttttggagctacagtaccccaaaaatgtcaaaagtcgagctagaagcctaaaaaaaccggcggccgggtgtgaaatttgatggagaattcgattttaaaactattttcgaggaaaatttaacttgaaagctcgaaatccggggttaagattaatttttaaa | |||
| Mapping_target | F53A3 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (67) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01326422 | |||
| WBVar01444037 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004128 | |||
| Transcript | F53A3.4d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4d.1:c.-1671-793A>T | ||||
| Intron_number | 1/11 | ||||
| F53A3.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4c.1:c.3196-793A>T | ||||
| Intron_number | 14/16 | ||||
| F53A3.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4b.1:c.3196-793A>T | ||||
| Intron_number | 14/23 | ||||
| F53A3.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F53A3.4a.1:c.3196-793A>T | ||||
| Intron_number | 15/23 | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
