WormBase Tree Display for Variation: WBVar00022321
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WBVar00022321 | Name | Public_name | WBVar00022321 | ||
---|---|---|---|---|---|
Other_name | pas16061 | ||||
haw39883 | |||||
cewivar00022482 | |||||
F53A3.4c.1:c.3196-3241G>A | |||||
F53A3.4b.1:c.3196-3241G>A | |||||
F53A3.4a.1:c.3196-3241G>A | |||||
F53A3.4d.1:c.-1671-3241G>A | |||||
HGVSg | CHROMOSOME_III:g.1924436G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F53A3 | |
Flanking_sequences | cgtacacatcgtctggactttcactcgacgcgaacaggatggatgtggttcgcggaaaacttgaactttcgaggaaaggggaaagcctagaagtccggattctgaagaggtccgggtgatcggtgaggatcagcttgaagatcgatccgagaagttgcagagctgaaattctggatcatcccaaaagatcccaaaagatcacagaatccgtctgcaacactctgaaagcccaggcacactggccacacatcagcgaatgatgtcagctattgtaaactccgccaagaattcacatgaagg | ttatggtcctctcaacgtttatcctaagctgtgaaggatcagaaaaatcggagttctctgcaaatgttggaggatcagaaaaggatctcagagggcgctgaggatcagctggccagatcatcctgaaatcagctaaggcggttcaagatcaagtcaagggtccgactaacggatcatgggcttcaatgggcttaactacatcacaaaaaccgtcaaggatctgaaaatcagccgtgtcaaacttcatggccagcctgagcaattcacaatacagaacttccgcctctgagccgtgttgaa | |||
Mapping_target | F53A3 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (154) | |||||
Laboratory | QX | ||||
AX | |||||
RW | |||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
WGS_Hawaiian_Waterston | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01326419 | |||
WBVar01258591 | |||||
WBVar01444029 | |||||
WBVar00043803 | |||||
Status | Live | ||||
Affects | Gene | WBGene00004128 | |||
Transcript | F53A3.4d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F53A3.4d.1:c.-1671-3241G>A | ||||
Intron_number | 1/11 | ||||
F53A3.4c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A3.4c.1:c.3196-3241G>A | ||||
Intron_number | 14/16 | ||||
F53A3.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A3.4b.1:c.3196-3241G>A | ||||
Intron_number | 14/23 | ||||
F53A3.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A3.4a.1:c.3196-3241G>A | ||||
Intron_number | 15/23 | ||||
Reference | WBPaper00040707 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |