WormBase Tree Display for Variation: WBVar00022031
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| WBVar00022031 | Name | Public_name | WBVar00022031 | ||
|---|---|---|---|---|---|
| Other_name | pas16003 | ||||
| haw141064 | |||||
| cewivar00194576 | |||||
| Y39A3CR.3a.1:c.1996+18G>T | |||||
| Y39A3CR.3b.1:c.808+18G>T | |||||
| HGVSg | CHROMOSOME_III:g.1872295G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y39A3CR | |
| Flanking_sequences | tgtgtatcgattgatgctcacgactatctttcactatattatgcagcatattttcatgcaatttcccgtgatctcgaatccgcgaaagatcggtgctcgcggagcctggctcttaatggagatcagcctgcggccattatgctcttggcgttgatttttacggcttacggagaccttaaaggagctctggatcttgttatcaactcgctcgccgagtttgagcataactatgggctcatggtgctcaggcttcatattgagacgaaattcggcagaattgaaggtaaaaacctggaaaag | cgcgcgaaattcggcatttttacgattttttactgcaaaattcgaattcagagcaccattttacccctattttgcatatttccgcgaaatttctgaaaactgtgcattttgtcgtgggatgtcacggtgtttgcgtacttttggcgctaccgtaccccccggaaattcaaatttttgggtttttcatcagatttgcggcacgaaaaattgcgcgaaaaattgcacagttttctgaaattttgcgaaaatatgcaaaataggggtaaaatggtgctctgaatgcgaatttagcagtgtaaa | |||
| Mapping_target | Y39A3CR | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (144) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01443972 | |||
| WBVar01326218 | |||||
| WBVar01258500 | |||||
| WBVar00560929 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00021444 | |||
| Transcript | Y39A3CR.3b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A3CR.3b.1:c.808+18G>T | ||||
| Intron_number | 4/7 | ||||
| Y39A3CR.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y39A3CR.3a.1:c.1996+18G>T | ||||
| Intron_number | 11/15 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00040707 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
