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WormBase Tree Display for Variation: WBVar00021884

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Name Class

WBVar00021884EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00021884
Other_namecbs20171
cb20171Paper_evidenceWBPaper00055507
HGVSgchrX:g.3290121C>T
Sequence_detailsSMapS_parentSequencecb25.fpc0045
Flanking_sequencesgtgtgtagtgacttatgctgattcgttatgcaaaatttttgggtgaagcg
Mapping_targetcb25.fpc0045
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestCTNAGBstDEI, DdeI699 180 121
CACHindI101 83 75 70 61 59 54 42 39 36 36 35 34 33 29 28 27 19 19 17 15 14 12 10 10 8 6 6 6 5 3 2 2 2 2
TCNNGAHpy178III, Hpy188III229 189 152 141 103 89 72 13 12
Polymorphic_strain_digestCTNAGBstDEI, DdeI430 269 180 121
CACHindI101 83 81 70 61 59 54 42 39 36 36 35 34 33 29 28 27 19 19 17 15 14 12 10 10 8 6 6 5 3 2 2 2 2
TCNNGAHpy178III, Hpy188III255 229 189 141 89 72 13 12
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00025067
TranscriptCBG01898.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG01898.1:c.454+52C>T
Intron_number6/13
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP