WormBase Tree Display for Variation: WBVar00021884
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WBVar00021884 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00021884 | ||||
Other_name | cbs20171 | |||||
cb20171 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrX:g.3290121C>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0045 | ||
Flanking_sequences | gtgtgtagtgacttatgctgattcg | ttatgcaaaatttttgggtgaagcg | ||||
Mapping_target | cb25.fpc0045 | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | CTNAG | BstDEI, DdeI | 699 180 121 | ||
CAC | HindI | 101 83 75 70 61 59 54 42 39 36 36 35 34 33 29 28 27 19 19 17 15 14 12 10 10 8 6 6 6 5 3 2 2 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 229 189 152 141 103 89 72 13 12 | ||||
Polymorphic_strain_digest | CTNAG | BstDEI, DdeI | 430 269 180 121 | |||
CAC | HindI | 101 83 81 70 61 59 54 42 39 36 36 35 34 33 29 28 27 19 19 17 15 14 12 10 10 8 6 6 5 3 2 2 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 255 229 189 141 89 72 13 12 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00025067 | ||||
Transcript | CBG01898.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG01898.1:c.454+52C>T | |||||
Intron_number | 6/13 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |