WormBase Tree Display for Variation: WBVar00020849
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| WBVar00020849 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00020849 | ||||
| Other_name | cbs19571 | |||||
| cb19571 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrV:g.7396780T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0156 | ||
| Flanking_sequences | gaagtcctaaaaaaatgcgactttt | gaacatttgaatgatttacctattt | ||||
| Mapping_target | cb25.fpc0156 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 1000 | ||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 693 307 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 691 309 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 693 307 | ||||
| RGCY | CviJI, CviTI | 327 188 107 105 96 73 55 49 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 1000 | ||||
| CAC | HindI | 235 149 123 118 113 69 57 38 24 21 20 14 8 7 2 2 | ||||
| GANTC | HinfI | 535 465 | ||||
| TTAA | MseI, Tru1I, Tru9I | 341 240 198 87 82 25 23 4 | ||||
| GAWTC | TfiI | 535 465 | ||||
| Polymorphic_strain_digest | TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 501 499 | |||
| CCNGG | Bme1390I, BssKI, BstSCI, MspR9I, ScrFI | 1000 | ||||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 1000 | ||||
| CCWGG | BseBI, BsiLI, Bst2UI, BstNI, BstOI, EcoRII, MvaI, Psp6I, PspGI | 1000 | ||||
| RGCY | CviJI, CviTI | 327 188 145 107 105 73 55 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 500 500 | ||||
| CAC | HindI | 235 149 123 118 113 69 57 38 24 21 14 14 8 7 6 2 2 | ||||
| GANTC | HinfI | 465 399 136 | ||||
| TTAA | MseI, Tru1I, Tru9I | 341 240 198 107 87 23 4 | ||||
| GAWTC | TfiI | 465 399 136 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00028942 | ||||
| Transcript | CBG06702.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG06702.1:c.43-20A>G | |||||
| Intron_number | 1/7 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
