WormBase Tree Display for Variation: WBVar00017731
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| WBVar00017731 | Name | Public_name | WBVar00017731 | ||
|---|---|---|---|---|---|
| Other_name | pas15143 | ||||
| cewivar00019697 | |||||
| Y71D11A.3b.1:c.418-4893G>A | |||||
| Y71D11A.5.1:c.453C>T | |||||
| CE29908:p.Cys151= | |||||
| Y71D11A.3a.1:c.418-5818G>A | |||||
| HGVSg | CHROMOSOME_III:g.1134177G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71D11A | |
| Flanking_sequences | ttttaaagaattttcaaaaattcataattttatcaatataagggctattttgttcacttttaacttaaatgtgcataaatatttcagcttcaattttaaaatgcaaaaaattttaaaaacttccataatcaaggtaccacaggacttttcgtgacgggacccaaaaatttcaaaaaataatttttttcaaaaattttcaaatctccaaaaaaatgacttaccagttccattcgcataaatcatcagaaaaatattgggaaacggagatttgtgaatatcggcggttttcgagttgatgaa | cacgaattcggcgtccagagcttctccaggagtaccgagttcagggataaattgtacttacaggggttcataaacgcgtagtttagtgctggatcataccaggtttcgtatatgtagatgtcaagctggaaatttgaatttttcgagaaaaatttttttttgaaaaaaaaattttttttcaaaattttcaaaaatattaaaatttttcaattacctgaaaatccgatgtgatatccgaaattgtcgtaatttcttgcacccatacttctacctcaacgtctacctggaacattatcgatt | |||
| Mapping_target | Y71D11A | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (85) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01443486 | |||
| WBVar01323662 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022106 | |||
| WBGene00022104 | |||||
| Transcript | Y71D11A.3b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71D11A.3b.1:c.418-4893G>A | ||||
| Intron_number | 5/9 | ||||
| Y71D11A.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71D11A.3a.1:c.418-5818G>A | ||||
| Intron_number | 6/9 | ||||
| Y71D11A.5.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y71D11A.5.1:c.453C>T | ||||
| HGVSp | CE29908:p.Cys151= | ||||
| cDNA_position | 511 | ||||
| CDS_position | 453 | ||||
| Protein_position | 151 | ||||
| Exon_number | 6/14 | ||||
| Codon_change | tgC/tgT | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
