WormBase Tree Display for Variation: WBVar00017196
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WBVar00017196 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00017196 | |||
Other_name | pas15036 | ||||
cewivar00070174 | |||||
Y71G12A.2c.3:c.-15-91G>A | |||||
Y71G12A.2c.1:c.-15-91G>A | |||||
Y71G12A.2c.4:c.-106G>A | |||||
Y71G12A.2c.2:c.-15-91G>A | |||||
Y71G12A.2b.1:c.2485-91G>A | |||||
HGVSg | CHROMOSOME_I:g.1916943G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y51F10 | |
Flanking_sequences | cgtagaagtggaaaaacaaatagctcttagaaccattgtctgaaactattttcaaattcacgtggtgccaggggctgtcccattgcggtttgatctacaaaaaatgcgggatttttttgcccaaaaaaaggggcgtcagcacactttcccatgcgaaatcagttgagaactctgcgtctcttctcccgcattttttgtagatcaacgtagatcaaaccgaaatgggacacgatgacgccatgtgtggtttctcctacctactgtagcctccagctagccgtaaacaatatatataaacaa | caaattcagcatttctttgaaatgtgttgaattgataacaaaactactgtagaattcaataaaaaaatattgatctacttttttttccagattctcgtaaaatggatggatcgtcgctacaatctatcgctgcaattcgtgccggtgatggtgatcaacagtaaaacgtcaatgttaactacggagtatgtggaattggaaaattggaagattgaaaattcagaaccaaaatggtccaaaactaccaattttcgtaatgagacgttctgaaaatttttcaaaaaaagttatggtggttca | |||
Mapping_target | Y51F10 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (58) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01430392 | |||
Status | Live | ||||
Affects | Gene | WBGene00022138 | |||
WBGene00219760 | |||||
Transcript | Y51F10.14 | ||||
Y71G12A.2c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.1:c.-15-91G>A | ||||
Intron_number | 9/14 | ||||
Y71G12A.2c.4 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.4:c.-106G>A | ||||
cDNA_position | 527 | ||||
Exon_number | 1/6 | ||||
Y71G12A.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2b.1:c.2485-91G>A | ||||
Intron_number | 11/15 | ||||
Y71G12A.2c.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.2:c.-15-91G>A | ||||
Intron_number | 6/11 | ||||
Y71G12A.2c.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12A.2c.3:c.-15-91G>A | ||||
Intron_number | 4/9 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |