WormBase Tree Display for Variation: WBVar00016611
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| WBVar00016611 | Name | Public_name | WBVar00016611 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_I:g.1738955G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71G12B | |
| Flanking_sequences | tgtctggtattcttgggtttgaacttccagcgttgaacccgcatattagacgtatcgacggccggcggggcaggtaatggctggtaagtttggagagaccgggggagtcccagagatgcatcgaccaaaagccgaaattactgagcttaatgaaaactcttcacgttttcagcaagaaatcgtcgaaacagaattcgacgacaacatcatcatctcggcgaaaggaatacttcacgccgtgcacacactcatgagatcagcctcaaatgctcaacgagagctcgcgatgcaaggtcgagc | gcggcaggcggcacaggtacctatcaatggtctgaaggcctgatcagtgcggctcgtgtcgtcgtcgcctcggttcacaagctgtgcgacgccgcgaatacgctgatgaagggacaaacgaccgaggaacgactcatctcggctgccaaacaggtgtcttcgtcgacggcgcaacttttggtcgcgtgtaacgtgagagccgatcccgatagtcaggcgaatcggagattgcaggctgctgggcaggctgttagggtgagttgggggaaaatcgataatcttaggatttaaaaaaattcc | |||
| Mapping_target | Y71G12B | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (26) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01277958 | |||
| WBVar01316317 | |||||
| WBVar00533934 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006771 | |||
| Transcript | Y71G12B.11c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y71G12B.11c.1:c.5202G>T | ||||
| HGVSp | CE46470:p.Ala1734= | ||||
| cDNA_position | 5270 | ||||
| CDS_position | 5202 | ||||
| Protein_position | 1734 | ||||
| Exon_number | 6/7 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Y71G12B.11e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y71G12B.11e.1:c.6096G>T | ||||
| HGVSp | CE50474:p.Ala2032= | ||||
| cDNA_position | 6096 | ||||
| CDS_position | 6096 | ||||
| Protein_position | 2032 | ||||
| Exon_number | 6/7 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Y71G12B.11a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y71G12B.11a.1:c.7191G>T | ||||
| HGVSp | CE29914:p.Ala2397= | ||||
| cDNA_position | 7196 | ||||
| CDS_position | 7191 | ||||
| Protein_position | 2397 | ||||
| Exon_number | 10/12 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Y71G12B.11d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y71G12B.11d.1:c.4065G>T | ||||
| HGVSp | CE49571:p.Ala1355= | ||||
| cDNA_position | 4349 | ||||
| CDS_position | 4065 | ||||
| Protein_position | 1355 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Y71G12B.11b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11b.1:c.*4496G>T | ||||
| cDNA_position | 7494 | ||||
| Exon_number | 12/13 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
