WormBase Tree Display for Variation: WBVar00016606
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WBVar00016606 | Name | Public_name | WBVar00016606 | ||
---|---|---|---|---|---|
Other_name | pas14918 | ||||
haw114068 | |||||
cewivar00069658 | |||||
Y71G12B.11d.1:c.3936+81A>T | |||||
Y71G12B.11a.1:c.7062+81A>T | |||||
Y71G12B.11c.1:c.5073+81A>T | |||||
Y71G12B.11e.1:c.5967+81A>T | |||||
Y71G12B.11b.1:c.*4367+81A>T | |||||
HGVSg | CHROMOSOME_I:g.1738608A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y71G12B | |
Flanking_sequences | gtctcgacgcttgcttctcgaagcatcgaagggtgtctcgagtgccctgtcgcatttggtgggcctgtgcaatgagatgaccggtcttccacacaatcacgagatggagtcggcggccgcgcaggccgagaacgagttgttgggtgccgcaagctcgattgaagccgcctcggcgaagcttgcagagcttagaccaaggcagattgtgcaggagaacacggtgagctattttctttattagaaacatttataaactaggactctcccaattcctcttcgattctatttttactaattctg | attccataattctatattctgtattcctgcccgccggccgctgatatgtctggtattcttgggtttgaacttccagcgttgaacccgcatattagacgtatcgacggccggcggggcaggtaatggctggtaagtttggagagaccgggggagtcccagagatgcatcgaccaaaagccgaaattactgagcttaatgaaaactcttcacgttttcagcaagaaatcgtcgaaacagaattcgacgacaacatcatcatctcggcgaaaggaatacttcacgccgtgcacacactcatga | |||
Mapping_target | Y71G12B | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (39) | |||||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
WBPerson4037 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01277957 | |||
WBVar00533933 | |||||
WBVar01316306 | |||||
WBVar01418443 | |||||
Status | Live | ||||
Affects | Gene | WBGene00006771 | |||
Transcript | Y71G12B.11c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12B.11c.1:c.5073+81A>T | ||||
Intron_number | 5/6 | ||||
Y71G12B.11e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12B.11e.1:c.5967+81A>T | ||||
Intron_number | 5/6 | ||||
Y71G12B.11a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12B.11a.1:c.7062+81A>T | ||||
Intron_number | 9/11 | ||||
Y71G12B.11d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12B.11d.1:c.3936+81A>T | ||||
Intron_number | 3/5 | ||||
Y71G12B.11b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71G12B.11b.1:c.*4367+81A>T | ||||
Intron_number | 11/12 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |