WormBase Tree Display for Variation: WBVar00016586
expand all nodes | collapse all nodes | view schema
| WBVar00016586 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00016586 | |||
| Other_name | pas14914 | ||||
| cewivar00069654 | |||||
| Y71G12B.11b.1:c.*287-64A>C | |||||
| Y71G12B.11d.1:c.-145-64A>C | |||||
| Y71G12B.11a.1:c.2982-64A>C | |||||
| Y71G12B.11c.1:c.993-64A>C | |||||
| Y71G12B.11e.1:c.1887-64A>C | |||||
| HGVSg | CHROMOSOME_I:g.1734383A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71G12B | |
| Flanking_sequences | gctctttctaacaggtgaacttcagctgttacttgtacgattccgtgcgcttcagctgtagaattccctttaaatctcacttttcataacaaccacagggctcatttttattagttttccagtgcgactgcttttgtcattttcgggttaaaacactaatttgggccaagttcccagagagcattggatagaatttcgatggtccttgtcaaacatttttggtatatccaaaaatttctacaaagttacataaattctatcctatgccaccttaccttaggcccaatgggaacataagcc | atgggagcataggcttcctaatcatcttcgtttctttcccctctacaaatttcctattttcagcctcatcacctccatccgtgaaagccagaaggtcgacaacacgcctggagagaagttcaaagcacagagccgcctcatccgtgactcctacaaagtcctcgaaacatccgttcgactcttcgaaacggcaagaacagcggtcccaatggtttccgatagtcatcttgcatcttctttggatcaatctgcgaatcgtcttggtacttctcttgccgatcttcgcacttctgtcaatga | |||
| Mapping_target | Y71G12B | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01418439 | |||
| WBVar01277952 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006771 | |||
| Transcript | Y71G12B.11c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11c.1:c.993-64A>C | ||||
| Intron_number | 4/6 | ||||
| Y71G12B.11e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11e.1:c.1887-64A>C | ||||
| Intron_number | 4/6 | ||||
| Y71G12B.11a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11a.1:c.2982-64A>C | ||||
| Intron_number | 8/11 | ||||
| Y71G12B.11d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11d.1:c.-145-64A>C | ||||
| Intron_number | 1/5 | ||||
| Y71G12B.11b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11b.1:c.*287-64A>C | ||||
| Intron_number | 10/12 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
