WormBase Tree Display for Variation: WBVar00016566
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| WBVar00016566 | Name | Public_name | WBVar00016566 | ||
|---|---|---|---|---|---|
| Other_name | pas14910 | ||||
| haw114064 | |||||
| cewivar00069646 | |||||
| Y71G12B.11c.1:c.162-198A>C | |||||
| Y71G12B.11f.1:c.1056-198A>C | |||||
| Y71G12B.11e.1:c.1056-198A>C | |||||
| Y71G12B.11a.1:c.2151-198A>C | |||||
| Y71G12B.11b.1:c.2151-198A>C | |||||
| HGVSg | CHROMOSOME_I:g.1730619A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71G12B | |
| Flanking_sequences | agtttaaaggtggagtaccgaaatctgagactttgctttttttagacccaaattggtccaaaactaccaaattttgtaatgatacgttctgaaaatttctcaaaaaaagttatgatggttcaaagttttggaaaaaatttgagattttagctgaaaatgggccattttttccaaaactttgaaccaccataacttttttttgagcaattttcaaaaggtttaattacgaaattcggtagttttggaccattttgggtctaaaaaagcagagtttcaaattcggtacccacgatactccaa | aatagctcagagttaacatcgcggcaacagggctagagcataaaattcataaaatagttagactataaagcgcaaactctatactctataggcttattgtaattgcacacttaaaaaaagtttagaacaacttgggattcagtctattaatgtacataatatccaagtcttctagtattaaaaatttctcatttcagcgccaagaccatctccgccgaatgcgacgagccgcaagtccaagagcgcgtcatccagtcggccacaaaatgtgcatttgccacgtcacaactggtagcctgc | |||
| Mapping_target | Y71G12B | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (39) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01277946 | |||
| WBVar00533929 | |||||
| WBVar01316217 | |||||
| WBVar01418431 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006771 | |||
| Transcript | Y71G12B.11f.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11f.1:c.1056-198A>C | ||||
| Intron_number | 2/3 | ||||
| Y71G12B.11c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11c.1:c.162-198A>C | ||||
| Intron_number | 2/6 | ||||
| Y71G12B.11e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11e.1:c.1056-198A>C | ||||
| Intron_number | 2/6 | ||||
| Y71G12B.11a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11a.1:c.2151-198A>C | ||||
| Intron_number | 6/11 | ||||
| Y71G12B.11b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71G12B.11b.1:c.2151-198A>C | ||||
| Intron_number | 6/12 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
