WormBase Tree Display for Variation: WBVar00012991
expand all nodes | collapse all nodes | view schema
WBVar00012991 | Name | Public_name | WBVar00012991 | ||
---|---|---|---|---|---|
Other_name | pas14195 | ||||
cewivar00077791 | |||||
CE51163:p.His376= | |||||
T07D3.9a.1:c.1263C>T | |||||
CE32064:p.His421= | |||||
T07D3.9a.2:c.1263C>T | |||||
T07D3.9b.1:c.1128C>T | |||||
HGVSg | CHROMOSOME_II:g.898259G>A | ||||
Sequence_details | SMap | S_parent | Sequence | T07D3 | |
Flanking_sequences | gaatactttcaaatgacaaatgtcacgttacgaagtttcgctgtcaaatgaaagtctttccttgtaagcttgaaaaagaacaaaactagtacgtatcctacggtttttattgaagagacaacaggttttctagaaatacctcgagttctctaaagtagaaaacaagaacttttttctgatgatacattcatggttctctaatattaacaaaacaagttcaatgttttgagaataagcttatttcacaattcttttcagcgtattgttcagcagccgacgtccttccaggtagcttgtggt | tgcacatagtgctttggaaccacacggagcacattcggattctcgacgctttccatcgtgaagttgaacacatttgtgttgacgcgagcctacaaaatcatacaaatcggaaacttgagtctttaagctcttcaagcttctcctcacctcttcaccgagcgtcggatgattcaacttggcgagctcggggagcttgtgctgatccgaaatcgtcgccgctaccttcacctgcacatattttccatcggtgtatgtgacgaatgagtcaaagtgcaggacatgcccaatttccacaggctt | |||
Mapping_target | T07D3 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00020311 | |||
Transcript | T07D3.9a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | T07D3.9a.1:c.1263C>T | ||||
HGVSp | CE32064:p.His421= | ||||
cDNA_position | 1270 | ||||
CDS_position | 1263 | ||||
Protein_position | 421 | ||||
Exon_number | 8/9 | ||||
Codon_change | caC/caT | ||||
Amino_acid_change | H | ||||
T07D3.9b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | T07D3.9b.1:c.1128C>T | ||||
HGVSp | CE51163:p.His376= | ||||
cDNA_position | 1280 | ||||
CDS_position | 1128 | ||||
Protein_position | 376 | ||||
Exon_number | 8/8 | ||||
Codon_change | caC/caT | ||||
Amino_acid_change | H | ||||
T07D3.9a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | T07D3.9a.2:c.1263C>T | ||||
HGVSp | CE32064:p.His421= | ||||
cDNA_position | 1316 | ||||
CDS_position | 1263 | ||||
Protein_position | 421 | ||||
Exon_number | 9/10 | ||||
Codon_change | caC/caT | ||||
Amino_acid_change | H | ||||
Method | WGS_Pasadena_Quinlan |