WormBase Tree Display for Variation: WBVar00012811
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| WBVar00012811 | Name | Public_name | WBVar00012811 | ||
|---|---|---|---|---|---|
| Other_name | pas14159 | ||||
| snp_T07D3[1] | |||||
| haw124358 | |||||
| cewivar00077682 | |||||
| CE13367:p.Glu260= | |||||
| T07D3.7b.1:c.780A>G | |||||
| CE32063:p.Glu279= | |||||
| T07D3.7a.1:c.837A>G | |||||
| HGVSg | CHROMOSOME_II:g.875898A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T07D3 | |
| Flanking_sequences | tctagggtgtaggatctaggatctaggatccagaatctagaatctaggatctaggctctgggatctaggctctaggatctaggctctaggctcctacgctcccagacaaacttcaatactccaactatatcttttaggcgtcatgaagcccggcatgcaaatgcaccaggagagcaaactcggtggaggccgcgaagtatggtttggattccatcaatccgtccgaccatcccaatggaagatgatgctcaacattgacgtctccgccacggccttttaccgcgcgatgccagtcatcga | ttcgtcgccgaggtgctcgagctcccagtccaagctctcgccgagcgtcgggccctctccgatgctcaacgcgtcaaattcaccaaagagatccgtggactcaagattgagatcacccattgtggagccgtgcgccggaagtacagagtttgcaacgtcacacgccgcccggcccagacccagaccttcccattgcaactggagactggccaaactattgagtgtactgtagccaagtacttctttgacaagtaccgtatccagctgaagtacccccaccttccatgcctccaagtcggt | |||
| Mapping_target | T07D3 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | SNP_Wicks | |||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| History | Acquires_merge | WBVar01358946 | |||
| WBVar00246129 | |||||
| WBVar00544223 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000106 | |||
| Transcript | T07D3.7b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T07D3.7b.1:c.780A>G | ||||
| HGVSp | CE13367:p.Glu260= | ||||
| cDNA_position | 782 | ||||
| CDS_position | 780 | ||||
| Protein_position | 260 | ||||
| Exon_number | 5/8 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| T07D3.7a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T07D3.7a.1:c.837A>G | ||||
| HGVSp | CE32063:p.Glu279= | ||||
| cDNA_position | 837 | ||||
| CDS_position | 837 | ||||
| Protein_position | 279 | ||||
| Exon_number | 5/8 | ||||
| Codon_change | gaA/gaG | ||||
| Amino_acid_change | E | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
