WormBase Tree Display for Variation: WBVar00012796
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| WBVar00012796 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00012796 | |||
| Other_name | pas14156 | ||||
| haw17036 | |||||
| cewivar00077675 | |||||
| T07D3.12:n.128T>C | |||||
| T07D3.7a.1:c.56-381T>C | |||||
| HGVSg | CHROMOSOME_II:g.873779T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T07D3 | |
| Flanking_sequences | aacccaaatttccatatgaaaatcgaaattttatcccctatacaattcaaattccccacgctccccaacccttttctaattgagttttggggtgcatcgaaaaacacgccagtgcaccgaaagtgcgccagctagcccgttgacggcattccttcccccgagggaacacccgctttcgcaatgacttttgaagccgattttggaggtctaaactagtttttttgagattttaactagaaattcgaaaaattcagtttaaattctatatagatcttaggttttttgaggaatctaggtaaa | tttggatttaccaattggtatagtaaagttagtgtggttttttagatttttgaagttctcagcaaattttcctttaattttgccaaaattttctatattttccacagcgaactttcaattttaaaatactctgaacaaatttactaaataaaatcgaaaattttttggcattttatcgatttttctcaagttgccaactatgtaataacctctatgatttcagagagatttttgatttttcccacttaagtatgtctgcactttaaaccaaaaattatggggtttcatgcttaaagttca | |||
| Mapping_target | T07D3 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00163786 | |||
| WBVar01358938 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00220060 | |||
| WBGene00000106 | |||||
| Transcript | T07D3.7a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T07D3.7a.1:c.56-381T>C | ||||
| Intron_number | 1/7 | ||||
| T07D3.12 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T07D3.12:n.128T>C | ||||
| cDNA_position | 128 | ||||
| Exon_number | 1/1 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
