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WormBase Tree Display for Variation: WBVar00006496

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Name Class

WBVar00006496NamePublic_nameWBVar00006496
Other_namepas12896
cewivar00017857
F42G9.6c.1:c.*126T>G
F42G9.6b.1:c.*126T>G
F42G9.6a.1:c.*126T>G
F42G9.5b.2:c.-7+259T>G
HGVSgCHROMOSOME_III:g.778556A>C
Sequence_detailsSMapS_parentSequenceF42G9
Flanking_sequencesctttttttgtgaaaataatcaattacaagaaaagagaagaggatctgatgcgagtagcaaaggggtgtgcgcccttcaaggacaaactgataagggaatgggtgaactgattatgccatatgatttttaattaaaaaaaaccactaaaccttcgaaaacaaatggctttaaaaacaaaaatggggttttggaaaatgtggattttactttaaaacatttgggtgttttacagtgaaatcccccgaaatctattgattatgcaaaaggggaatgtgtgagtgactagggaaatgctctctgcaacgtgtgattatttttctctgttctaggaaaccggttttgtgttcgatttttcaaaatgcaatagatggagtaattatgacagggttttggactgaaaaacacgtggaaaagtaactttttcatcaaactggttgactagacacgatttcttctcgttgctcaaaggtaatagctgcactattaaggaatttctgaaccgccgccggtaaatgatctgatagtactgatactgatagcttcacatcactcagacactttggatcaatccacgtttccactgtggcaccagtgtcttga
Mapping_targetF42G9
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (17)
PersonWBPerson6900
AnalysisWGS_Pasadena_Quinlan
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00018364
WBGene00000117
TranscriptF42G9.6c.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42G9.6c.1:c.*126T>G
cDNA_position2116
Exon_number11/11
F42G9.6a.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42G9.6a.1:c.*126T>G
cDNA_position2108
Exon_number11/11
F42G9.5b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF42G9.5b.2:c.-7+259T>G
Intron_number1/7
F42G9.6b.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScF42G9.6b.1:c.*126T>G
cDNA_position2188
Exon_number12/12
MethodWGS_Pasadena_Quinlan