WormBase Tree Display for Variation: WBVar00006496
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WBVar00006496 | Name | Public_name | WBVar00006496 | ||
---|---|---|---|---|---|
Other_name | pas12896 | ||||
cewivar00017857 | |||||
F42G9.6c.1:c.*126T>G | |||||
F42G9.6b.1:c.*126T>G | |||||
F42G9.6a.1:c.*126T>G | |||||
F42G9.5b.2:c.-7+259T>G | |||||
HGVSg | CHROMOSOME_III:g.778556A>C | ||||
Sequence_details | SMap | S_parent | Sequence | F42G9 | |
Flanking_sequences | ctttttttgtgaaaataatcaattacaagaaaagagaagaggatctgatgcgagtagcaaaggggtgtgcgcccttcaaggacaaactgataagggaatgggtgaactgattatgccatatgatttttaattaaaaaaaaccactaaaccttcgaaaacaaatggctttaaaaacaaaaatggggttttggaaaatgtggattttactttaaaacatttgggtgttttacagtgaaatcccccgaaatctattgattatgcaaaaggggaatgtgtgagtgactagggaaatgctctctg | caacgtgtgattatttttctctgttctaggaaaccggttttgtgttcgatttttcaaaatgcaatagatggagtaattatgacagggttttggactgaaaaacacgtggaaaagtaactttttcatcaaactggttgactagacacgatttcttctcgttgctcaaaggtaatagctgcactattaaggaatttctgaaccgccgccggtaaatgatctgatagtactgatactgatagcttcacatcactcagacactttggatcaatccacgtttccactgtggcaccagtgtcttga | |||
Mapping_target | F42G9 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (17) | |||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00018364 | |||
WBGene00000117 | |||||
Transcript | F42G9.6c.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F42G9.6c.1:c.*126T>G | ||||
cDNA_position | 2116 | ||||
Exon_number | 11/11 | ||||
F42G9.6a.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G9.6a.1:c.*126T>G | ||||
cDNA_position | 2108 | ||||
Exon_number | 11/11 | ||||
F42G9.5b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G9.5b.2:c.-7+259T>G | ||||
Intron_number | 1/7 | ||||
F42G9.6b.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F42G9.6b.1:c.*126T>G | ||||
cDNA_position | 2188 | ||||
Exon_number | 12/12 | ||||
Method | WGS_Pasadena_Quinlan |