WormBase Tree Display for Variation: WBVar00005556
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WBVar00005556 | Name | Public_name | WBVar00005556 | ||
---|---|---|---|---|---|
Other_name | pas12708 | ||||
cewivar00017459 | |||||
B0353.1a.1:c.28-2160T>C | |||||
B0353.1c.1:c.-36-2160T>C | |||||
B0353.1b.1:c.109-2160T>C | |||||
HGVSg | CHROMOSOME_III:g.563400T>C | ||||
Sequence_details | SMap | S_parent | Sequence | B0353 | |
Flanking_sequences | catctgcgcggaaagagaaagagtgaaataactcatatttgtcctttatgccgttttgcccgatgactcatcgaattggaacgatctgtgtgtatcataacatgcatttcttgcatttgcaacacactttagcacagagtctttctttgcctatttccctctaaattttgtatacttttgattattcgtaaaaaataagataaattcaaactcagcgtaaaattctggtcaagcaggattttgtttggggtctctagctcaattttgaacatttttgggtactttagcttgatcaactac | gtaacccatcacacaagactttacgacatttttcagaaaaacggatttttttgtataattgagacatgctgaattcaaatttcataattaaacttttttgattttgcaaaattccaatacaataccctactgcactgtttcgcaattttttgttagtttgattttgaattttgcaggcttttttatctgaatcaattttgaacatttttgagtactgtagtctgaaaagtacgcaaacaccgactaccgtaacccaatacaccgaatctcacgacatttcacagaaaagctctgaaaatt | |||
Mapping_target | B0353 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (129) | |||||
Laboratory | QX | ||||
AX | |||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01254677 | |||
WBVar01443106 | |||||
WBVar01389193 | |||||
Status | Live | ||||
Affects | Gene | WBGene00015155 | |||
Transcript | B0353.1c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | B0353.1c.1:c.-36-2160T>C | ||||
Intron_number | 1/10 | ||||
B0353.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0353.1b.1:c.109-2160T>C | ||||
Intron_number | 2/10 | ||||
B0353.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0353.1a.1:c.28-2160T>C | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00040707 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |