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WormBase Tree Display for Variation: WBVar00005556

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Name Class

WBVar00005556NamePublic_nameWBVar00005556
Other_namepas12708
cewivar00017459
B0353.1a.1:c.28-2160T>C
B0353.1c.1:c.-36-2160T>C
B0353.1b.1:c.109-2160T>C
HGVSgCHROMOSOME_III:g.563400T>C
Sequence_detailsSMapS_parentSequenceB0353
Flanking_sequencescatctgcgcggaaagagaaagagtgaaataactcatatttgtcctttatgccgttttgcccgatgactcatcgaattggaacgatctgtgtgtatcataacatgcatttcttgcatttgcaacacactttagcacagagtctttctttgcctatttccctctaaattttgtatacttttgattattcgtaaaaaataagataaattcaaactcagcgtaaaattctggtcaagcaggattttgtttggggtctctagctcaattttgaacatttttgggtactttagcttgatcaactacgtaacccatcacacaagactttacgacatttttcagaaaaacggatttttttgtataattgagacatgctgaattcaaatttcataattaaacttttttgattttgcaaaattccaatacaataccctactgcactgtttcgcaattttttgttagtttgattttgaattttgcaggcttttttatctgaatcaattttgaacatttttgagtactgtagtctgaaaagtacgcaaacaccgactaccgtaacccaatacaccgaatctcacgacatttcacagaaaagctctgaaaatt
Mapping_targetB0353
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (129)
LaboratoryQX
AX
PersonWBPerson6900
WBPerson1730
AnalysisWGS_Pasadena_Quinlan
WGS_De_Bono
Million_mutation_project_reanalysis
WGS_Andersen
HistoryAcquires_mergeWBVar01254677
WBVar01443106
WBVar01389193
StatusLive
AffectsGeneWBGene00015155
TranscriptB0353.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScB0353.1c.1:c.-36-2160T>C
Intron_number1/10
B0353.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScB0353.1b.1:c.109-2160T>C
Intron_number2/10
B0353.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScB0353.1a.1:c.28-2160T>C
Intron_number2/10
ReferenceWBPaper00040707
WBPaper00037807
MethodWGS_Pasadena_Quinlan