WormBase Tree Display for Variation: WBVar00004549

WBVar00004549 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00004549
    Other_name: cbs4085
      cb4085 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.11511281T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4069d
    Flanking_sequences: gaagcagcagttagatcctttggag tttggtcaatcgttgagaagattca
    Mapping_target: cb25.fpc4069d
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TGCGCA Acc16I, AviII, FspI, MstI, NsbI 843 157
        CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 1000
        AGCT AluI 296 284 176 125 51 45 17 6
        RGCY CviJI, CviTI 296 272 125 99 77 51 45 17 12 6
      Polymorphic_strain_digest: TGCGCA Acc16I, AviII, FspI, MstI, NsbI 1000
        CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 842 158
        AGCT AluI 284 228 176 125 68 51 45 17 6
        RGCY CviJI, CviTI 272 228 125 99 77 68 51 45 17 12 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00037279
    Transcript: CBG17724.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG17724.1:c.1390A>G
        HGVSp: CBP18995.1:p.Thr464Ala
        cDNA_position: 1456
        CDS_position: 1390
        Protein_position: 464
        Exon_number: 6/12
        Codon_change: Act/Gct
        Amino_acid_change: T/A
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP