WormBase Tree Display for Variation: WBVar00003616
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WBVar00003616 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00003616 | |||
Other_name | pas12320 | ||||
cewivar00119421 | |||||
Y65B4BR.4b.1:c.805-259A>C | |||||
Y65B4BR.4a.1:c.805-259A>C | |||||
Y65B4BR.12:n.109A>C | |||||
HGVSg | CHROMOSOME_I:g.539194A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y65B4BR | |
Flanking_sequences | agagatccgagaggaagagtgagttttccggcggaaaaagcagatttagcacgagaaaagcgtttctgattatatttttgatgcgaaaatcatcaaaattaaaaatatctaccgtagccgcggatacctggaccaaaatgccgaaaaaagtgacctgataaattattttaaggctaaaatcttgatttttacataattagtgtcttatttttgttgatttcttgtcaaatttttgtaattgcatcgaaataggccaaaaataaagtaaaaatcaacttccaacacagaaaaactgacaaa | ttgaagatttttgctgaattcaggcaatttttcgtaattttgatcctccataattttttttttcgagaaaattttgaaattttttctttaaatacggcctgaaaattaggaaattataacgacggataaaaaattctgattttctttattttaaccaaggtctccaattatttgataatcgaaaaaaaaaaaactttccagtgatttttacttgaaaaatgtctaaaaattcacgccaggtgcacaatccattttcaggtgtattacgtggatcacaacacgcgcacgaccacctggcaa | |||
Mapping_target | Y65B4BR | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (56) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01429829 | |||
Status | Live | ||||
Affects | Gene | WBGene00007009 | |||
WBGene00220191 | |||||
Transcript | Y65B4BR.12 | VEP_consequence | non_coding_transcript_exon_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y65B4BR.12:n.109A>C | ||||
cDNA_position | 109 | ||||
Exon_number | 1/1 | ||||
Y65B4BR.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y65B4BR.4a.1:c.805-259A>C | ||||
Intron_number | 5/11 | ||||
Y65B4BR.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y65B4BR.4b.1:c.805-259A>C | ||||
Intron_number | 5/11 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |