WormBase Tree Display for Variation: WBVar00002524
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WBVar00002524 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00002524 | ||||
Other_name | cbs2619 | |||||
cb2619 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrX:g.9223945C>A | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | gaccttcccttccagctgaatttta | tgttcctttaagagatatcgttaat | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | G | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 501 353 121 25 | ||
CAC | HindI | 285 141 99 92 80 64 50 35 33 30 30 24 11 8 7 6 5 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 357 295 216 116 16 | ||||
TTAA | MseI, Tru1I, Tru9I | 311 168 115 114 75 45 44 36 26 21 16 13 10 6 | ||||
Polymorphic_strain_digest | ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 854 121 25 | |||
CAC | HindI | 285 141 99 92 80 64 50 35 33 30 30 24 11 11 8 7 | ||||
ACGT | HpyCH4IV, MaeII, TaiI, TscI | 373 295 216 116 | ||||
TTAA | MseI, Tru1I, Tru9I | 324 168 115 114 75 45 44 36 26 21 16 10 6 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00034878 | ||||
Transcript | CBG14346.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG14346.1:c.189+328C>A | |||||
Intron_number | 1/5 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |