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WormBase Tree Display for Variation: WBVar00002524

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Name Class

WBVar00002524EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00002524
Other_namecbs2619
cb2619Paper_evidenceWBPaper00055507
HGVSgchrX:g.9223945C>A
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesgaccttcccttccagctgaattttatgttcctttaagagatatcgttaat
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI501 353 121 25
CACHindI285 141 99 92 80 64 50 35 33 30 30 24 11 8 7 6 5
ACGTHpyCH4IV, MaeII, TaiI, TscI357 295 216 116 16
TTAAMseI, Tru1I, Tru9I311 168 115 114 75 45 44 36 26 21 16 13 10 6
Polymorphic_strain_digestACNGTBst4CI, HpyCH4III, TaaI, Tsp4CI854 121 25
CACHindI285 141 99 92 80 64 50 35 33 30 30 24 11 11 8 7
ACGTHpyCH4IV, MaeII, TaiI, TscI373 295 216 116
TTAAMseI, Tru1I, Tru9I324 168 115 114 75 45 44 36 26 21 16 10 6
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00034878
TranscriptCBG14346.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG14346.1:c.189+328C>A
Intron_number1/5
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP