WormBase Tree Display for Variation: WBVar00002109

WBVar00002109 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00002109
    Other_name: cbs2533
      cb2533 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.8339566T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc3857a
    Flanking_sequences: agtggtcaatcagagaaacgaagtt aattttcattgattgtgatatcaat
    Mapping_target: cb25.fpc3857a
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTAA MseI, Tru1I, Tru9I 240 166 164 95 76 69 60 56 37 22 15
      Polymorphic_strain_digest: TTAA MseI, Tru1I, Tru9I 240 226 164 95 76 69 56 37 22 15
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00034755
    Transcript: CBG14172a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14172a.1:c.1326+166A>C
        Intron_number: 11/16
      CBG14172b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG14172b.1:c.1326+166A>C
        Intron_number: 11/15
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP