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WormBase Tree Display for Variation: WBVar00001959

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Name Class

WBVar00001959EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00001959
Other_namecbs2499
cb2499Paper_evidenceWBPaper00055507
Sequence_detailsSMapS_parentSequencecb25.fpc3857a
Flanking_sequencesaccaacccatccaacaatcaagtttttcgccgctgctgcaaatatagttc
Mapping_targetcb25.fpc3857a
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestGGWCCAflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI762 188 50
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI762 188 50
RGGNCCYDraII, EcoO109I, PssI762 188 50
TTAAMseI, Tru1I, Tru9I318 269 138 118 83 42 32
RGGWCCYPpuMI, PpuXI, Psp5II, PspPPI762 188 50
AGGWCCTSse8647I950 50
AATTSse9I, TasI, Tsp509I, TspEI231 200 170 131 68 54 40 27 23 20 14 13 9
Polymorphic_strain_digestGGWCCAflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI762 238
GGNCCAspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI762 238
RGGNCCYDraII, EcoO109I, PssI762 238
TTAAMseI, Tru1I, Tru9I269 265 138 118 83 53 42 32
RGGWCCYPpuMI, PpuXI, Psp5II, PspPPI762 238
AGGWCCTSse8647I1000
AATTSse9I, TasI, Tsp509I, TspEI231 200 199 170 54 40 27 23 20 14 13 9
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP