WormBase Tree Display for Variation: WBVar00001959
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WBVar00001959 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00001959 | ||||
Other_name | cbs2499 | |||||
cb2499 | Paper_evidence | WBPaper00055507 | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc3857a | ||
Flanking_sequences | accaacccatccaacaatcaagttt | ttcgccgctgctgcaaatatagttc | ||||
Mapping_target | cb25.fpc3857a | |||||
Type_of_mutation | Substitution | A | G | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 762 188 50 | ||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 762 188 50 | ||||
RGGNCCY | DraII, EcoO109I, PssI | 762 188 50 | ||||
TTAA | MseI, Tru1I, Tru9I | 318 269 138 118 83 42 32 | ||||
RGGWCCY | PpuMI, PpuXI, Psp5II, PspPPI | 762 188 50 | ||||
AGGWCCT | Sse8647I | 950 50 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 231 200 170 131 68 54 40 27 23 20 14 13 9 | ||||
Polymorphic_strain_digest | GGWCC | AflI, AvaII, Bme18I, Eco47I, Psp03I, SinI, VpaK11AI, VpaK11BI | 762 238 | |||
GGNCC | AspS9I, AsuI, BsiZI, Cfr13I, FmuI, PspPI, Sau96I, UnbI | 762 238 | ||||
RGGNCCY | DraII, EcoO109I, PssI | 762 238 | ||||
TTAA | MseI, Tru1I, Tru9I | 269 265 138 118 83 53 42 32 | ||||
RGGWCCY | PpuMI, PpuXI, Psp5II, PspPPI | 762 238 | ||||
AGGWCCT | Sse8647I | 1000 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 231 200 199 170 54 40 27 23 20 14 13 9 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |