WormBase Tree Display for Variation: WBVar00001676
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| WBVar00001676 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00001676 | |||
| Other_name | pas11932 | ||||
| cewivar00101907 | |||||
| CE49100:p.Leu34= | |||||
| CE48530:p.Leu34= | |||||
| W01D2.2c.1:c.102A>G | |||||
| W01D2.2b.1:c.384A>G | |||||
| W01D2.2a.1:c.384A>G | |||||
| W01D2.2d.1:c.102A>G | |||||
| CE20125:p.Leu128= | |||||
| CE20124:p.Leu128= | |||||
| HGVSg | CHROMOSOME_II:g.14817251T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | W01D2 | |
| Flanking_sequences | cacatctctcaactgatcaatcgattttagaatatccacaaatagtacaaaagctcgtcgaaagtccgcgacgacgtcattcaacgttgcgattctctcggcggtgggcgtcaggggagttcgtggcgagaccactttcgtattatgaaatgcgtaacgaaaatcataggtgcccgggtaggtcagcttccagaactcttcgggatccgtcctcgcgtagatcgcacgtagattatcgattatttgctccttttttatgtcaagtgtgaataatgacgtgtgcgacttctttttcacctt | aacgcgtcggtttgtgtgctaatcgatagagtttccggcatggcttcttcgtcccattcgggatcctctactgtgtcgccttgtaccgcgcgtggattcattccgacgtcaaggcatcgcgttagtcggcatgagcggcacgcgtttcgttgttctgaaaatagccaagttgcgattggagcgcgttcgtcggttggctttgcaattttcaccaaaaaattactgtacctggtctcgacacgacgaatttttgttaaatgcaaaaaggtgtgcgcctttaaagaatactgtagtttcaaa | |||
| Mapping_target | W01D2 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (26) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01253812 | |||
| WBVar01321063 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003651 | |||
| Transcript | W01D2.2d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | W01D2.2d.1:c.102A>G | ||||
| HGVSp | CE49100:p.Leu34= | ||||
| cDNA_position | 102 | ||||
| CDS_position | 102 | ||||
| Protein_position | 34 | ||||
| Exon_number | 1/4 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| W01D2.2c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W01D2.2c.1:c.102A>G | ||||
| HGVSp | CE48530:p.Leu34= | ||||
| cDNA_position | 102 | ||||
| CDS_position | 102 | ||||
| Protein_position | 34 | ||||
| Exon_number | 1/4 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| W01D2.2b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W01D2.2b.1:c.384A>G | ||||
| HGVSp | CE20125:p.Leu128= | ||||
| cDNA_position | 404 | ||||
| CDS_position | 384 | ||||
| Protein_position | 128 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| W01D2.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | W01D2.2a.1:c.384A>G | ||||
| HGVSp | CE20124:p.Leu128= | ||||
| cDNA_position | 402 | ||||
| CDS_position | 384 | ||||
| Protein_position | 128 | ||||
| Exon_number | 4/8 | ||||
| Codon_change | ttA/ttG | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
