WormBase Tree Display for Variation: WBVar00000499
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| WBVar00000499 | Evidence | Person_evidence | WBPerson616 | ||
|---|---|---|---|---|---|
| Name | Public_name | bn121 | |||
| Other_name (4) | |||||
| HGVSg | CHROMOSOME_I:g.507464_507648del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y65B4BL | |
| Flanking_sequences | TTGACAATTTGATTTTGCAGGTCATCAAGA | TATGAGCTTCAGCCAGTTCCACTTCTCAGAC | |||
| Mapping_target | Y65B4BL | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00034459 | ||||
| Laboratory | SS | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00022034 | |||
| Transcript | Y65B4BL.2a.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y65B4BL.2a.1:c.737_921del | ||||
| HGVSp | CE25536:p.Met246IlefsTer2 | ||||
| cDNA_position | 741-925 | ||||
| CDS_position | 737-921 | ||||
| Protein_position | 246-307 | ||||
| Exon_number | 7/14 | ||||
| Codon_change | aTGCAGCTTGGCCTGTATGTCGGCGAACGCCTACTGATTTGCAAAGAACTCTCGCAGTTCGACTTTATTATCCCACTGCAGAAGCCATTTTCCCGAGGAACGGACAAGACTTTGATCTACCCAGCCGTCGGAGAATACTTTCATTTCAGTGCTATTTGGTCGATGCAGCACAACGGTTTTCTGATC/a | ||||
| Amino_acid_change | MQLGLYVGERLLICKELSQFDFIIPLQKPFSRGTDKTLIYPAVGEYFHFSAIWSMQHNGFLI/X | ||||
| Y65B4BL.2b.1 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y65B4BL.2b.1:c.602_786del | ||||
| HGVSp | CE49430:p.Met201IlefsTer2 | ||||
| cDNA_position | 602-786 | ||||
| CDS_position | 602-786 | ||||
| Protein_position | 201-262 | ||||
| Exon_number | 5/11 | ||||
| Codon_change | aTGCAGCTTGGCCTGTATGTCGGCGAACGCCTACTGATTTGCAAAGAACTCTCGCAGTTCGACTTTATTATCCCACTGCAGAAGCCATTTTCCCGAGGAACGGACAAGACTTTGATCTACCCAGCCGTCGGAGAATACTTTCATTTCAGTGCTATTTGGTCGATGCAGCACAACGGTTTTCTGATC/a | ||||
| Amino_acid_change | MQLGLYVGERLLICKELSQFDFIIPLQKPFSRGTDKTLIYPAVGEYFHFSAIWSMQHNGFLI/X | ||||
| Interactor | WBInteraction000503464 | ||||
| WBInteraction000503465 | |||||
| WBInteraction000503466 | |||||
| WBInteraction000503467 | |||||
| WBInteraction000503468 | |||||
| WBInteraction000503469 | |||||
| WBInteraction000503470 | |||||
| Isolation | Mutagen | EMS | Person_evidence | WBPerson616 | |
| Genetics | Interpolated_map_position | I | -18.9835 | ||
| Description | Phenotype (4) | ||||
| Reference | WBPaper00035324 | ||||
| Method | Deletion_allele |
