WormBase Tree Display for Variation: WBVar00271936
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WBVar00271936 | Evidence | Paper_evidence | WBPaper00005369 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00271936 | ||||
Other_name | uCE5-1264 | |||||
Y58A7A.3.2:c.1867G>A | ||||||
Y58A7A.3.1:c.1867G>A | ||||||
CE26196:p.Glu623Lys | ||||||
HGVSg | CHROMOSOME_V:g.5078762C>T | |||||
Sequence_details | SMap | S_parent | Sequence | Y58A7A | ||
Flanking_sequences | TCAGCATAATTTTCACAATTCATTGGCCAATGAGGTACTCCCTTGCAATCCCGACACCAAGAATATCCACATGGACATGAACGATTTTGAGTTTTATTTT | ATTCCCTGGTTCTTCGAAAAATATAGTTGACTTGCAAGAAGGGCACTTTTCAAAATCTCCAGTTGCACCAAGATCCTTGTAAATAGTTTCCGCAACTGTC | ||||
Mapping_target | Y58A7A | |||||
Type_of_mutation | Substitution | C | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | |||
Analysis | SNP_Swan | |||||
Status | Live | |||||
Affects | Gene | WBGene00021977 | ||||
Transcript | Y58A7A.3.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0.49 | tolerated | ||||
PolyPhen | 0.141 | benign | ||||
HGVSc | Y58A7A.3.1:c.1867G>A | |||||
HGVSp | CE26196:p.Glu623Lys | |||||
cDNA_position | 1946 | |||||
CDS_position | 1867 | |||||
Protein_position | 623 | |||||
Exon_number | 6/8 | |||||
Codon_change | Gaa/Aaa | |||||
Amino_acid_change | E/K | |||||
Y58A7A.3.2 (12) | ||||||
Reference | WBPaper00005369 | |||||
Method | SNP_Swan |