WormBase Tree Display for Variation: WBVar02152367
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WBVar02152367 | Name | Public_name | tm12082 | |||||
---|---|---|---|---|---|---|---|---|
Other_name (16) | ||||||||
HGVSg | CHROMOSOME_V:g.6908511_6908652del | |||||||
Sequence_details | SMap | S_parent | Sequence | K11C4 | ||||
Flanking_sequences | atgacaaactgaacctgagattaagccttt | gataggaaagaagaggatagaaaagttttg | ||||||
Mapping_target | K11C4 | |||||||
Source_location | 7 | CHROMOSOME_V | 6908510 | 6908653 | Inferred_automatically | National_Bioresource_Project | ||
Type_of_mutation | Deletion | |||||||
PCR_product | tm12082_external | |||||||
tm12082_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Laboratory | FX | |||||||
Author | Mitani S | |||||||
DB_info | Database | National_Bioresource_Project | seq | 12082 | ||||
NBP_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00006801 | ||||||
Transcript | K11C4.5l.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5l.1:c.10792-54_10877+2del | |||||||
Intron_number | 30-31/45 | |||||||
Exon_number | 31/46 | |||||||
K11C4.5e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5e.1:c.11188-54_11273+2del | |||||||
Intron_number | 33-34/49 | |||||||
Exon_number | 34/50 | |||||||
K11C4.5a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5a.1:c.11188-54_11273+2del | |||||||
Intron_number | 34-35/50 | |||||||
Exon_number | 35/51 | |||||||
K11C4.5k.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5k.1:c.11140-54_11225+2del | |||||||
Intron_number | 32-33/47 | |||||||
Exon_number | 33/48 | |||||||
K11C4.5g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5g.1:c.11146-54_11231+2del | |||||||
Intron_number | 32-33/48 | |||||||
Exon_number | 33/49 | |||||||
K11C4.5n.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5n.1:c.10834-54_10919+2del | |||||||
Intron_number | 31-32/46 | |||||||
Exon_number | 32/47 | |||||||
K11C4.5d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5d.1:c.10798-54_10883+2del | |||||||
Intron_number | 30-31/46 | |||||||
Exon_number | 31/47 | |||||||
K11C4.5i.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5i.1:c.11182-54_11267+2del | |||||||
Intron_number | 33-34/48 | |||||||
Exon_number | 34/49 | |||||||
K11C4.5c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5c.1:c.11146-54_11231+2del | |||||||
Intron_number | 32-33/48 | |||||||
Exon_number | 33/49 | |||||||
K11C4.5j.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5j.1:c.10834-54_10919+2del | |||||||
Intron_number | 31-32/46 | |||||||
Exon_number | 32/47 | |||||||
K11C4.5p.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5p.1:c.10792-54_10877+2del | |||||||
Intron_number | 30-31/45 | |||||||
Exon_number | 31/46 | |||||||
K11C4.5o.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5o.1:c.11140-54_11225+2del | |||||||
Intron_number | 32-33/47 | |||||||
Exon_number | 33/48 | |||||||
K11C4.5h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5h.1:c.10798-54_10883+2del | |||||||
Intron_number | 30-31/45 | |||||||
Exon_number | 31/46 | |||||||
K11C4.5m.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5m.1:c.11182-54_11267+2del | |||||||
Intron_number | 33-34/48 | |||||||
Exon_number | 34/49 | |||||||
K11C4.5b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5b.1:c.10840-54_10925+2del | |||||||
Intron_number | 31-32/46 | |||||||
Exon_number | 32/47 | |||||||
K11C4.5f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
VEP_impact | HIGH | |||||||
HGVSc | K11C4.5f.1:c.10840-54_10925+2del | |||||||
Intron_number | 31-32/46 | |||||||
Exon_number | 32/47 | |||||||
Isolation | Mutagen | TMP/UV | ||||||
Genetics | Map | V | ||||||
Remark | 27329/27330-27471/27472(142 bp deletion) | |||||||
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. | Paper_evidence | WBPaper00041807 | ||||||
Method | NBP_knockout_allele |