WormBase Tree Display for Variation: WBVar00278185
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WBVar00278185 | Evidence | Paper_evidence | WBPaper00036200 | |||
---|---|---|---|---|---|---|
Name | Public_name | e3003 | ||||
Other_name (22) | ||||||
HGVSg | CHROMOSOME_II:g.14657745G>T | |||||
Sequence_details | SMap | S_parent | Sequence | ZC101 | ||
Flanking_sequences | CCGGCATCCTGCAATTGTGTCGACGGAATC | TCAAGACTCCACGATCATCACTAGATCCAA | ||||
Mapping_target | ZC101 | |||||
Type_of_mutation | Substitution | G | T | |||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00005866 | |||||
Laboratory | VC | |||||
CB | ||||||
DM | ||||||
Analysis | Million_Mutation_Pilot_Project | |||||
KO_consortium_allele | ||||||
Status | Live | |||||
Affects | Gene | WBGene00006787 | ||||
Transcript | ZC101.2l.1 (12) | |||||
ZC101.2c.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | ZC101.2c.1:c.5083+293C>A | |||||
Intron_number | 17/23 | |||||
ZC101.2f.1 | VEP_consequence | missense_variant | ||||
VEP_impact | MODERATE | |||||
SIFT | 0.28 | tolerated | ||||
PolyPhen | 0.752 | possibly_damaging | ||||
HGVSc | ZC101.2f.1:c.4979C>A | |||||
HGVSp | CE37074:p.Thr1660Lys | |||||
cDNA_position | 5070 | |||||
CDS_position | 4979 | |||||
Protein_position | 1660 | |||||
Exon_number | 16/24 | |||||
Codon_change | aCg/aAg | |||||
Amino_acid_change | T/K | |||||
ZC101.2j.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | ZC101.2j.1:c.4787-254C>A | |||||
Intron_number | 15/22 | |||||
ZC101.2o.1 (12) | ||||||
ZC101.2n.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | ZC101.2n.1:c.5084-254C>A | |||||
Intron_number | 16/23 | |||||
ZC101.2d.1 (12) | ||||||
ZC101.2e.1 (12) | ||||||
ZC101.2k.1 (12) | ||||||
ZC101.2m.1 (12) | ||||||
ZC101.2a.1 (12) | ||||||
ZC101.2i.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | ZC101.2i.1:c.4787-648C>A | |||||
Intron_number | 16/22 | |||||
ZC101.2r.1 (12) | ||||||
Isolation | Mutagen | EMS | ||||
Reference | WBPaper00036200 | |||||
Remark | Allele identified through whole-genome sequencing by the Gene Knockout Consortium | Paper_evidence | WBPaper00036200 | |||
Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
Method | KO_consortium_allele |