WormBase Tree Display for Variation: WBVar00118143
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| WBVar00118143 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00118143 | ||||
| Other_name | cbs53664 | |||||
| HGVSg | chrI:g.7470869T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2852 | ||
| Flanking_sequences | tacgtcattcgcaaatggattcgctgagttaatagtctttttctgatctt | gaattgccttaagcgttcttgctccagttcgatatatctttgtctttcgg | ||||
| Mapping_target | cb25.fpc2852 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 876 124 | ||
| CCGC | AciI | 570 375 55 | ||||
| RAATTY | AcsI, ApoI, XapI | 748 252 | ||||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 550 450 | ||||
| GTAC | AfaI, Csp6I, RsaI | 616 167 126 91 | ||||
| AGCT | AluI | 363 328 252 49 8 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 681 319 | ||||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 459 390 151 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 751 249 | ||||
| GGCGCC | BbeI, EgeI, EheI, KasI, Mly113I, NarI, SfoI | 1000 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 287 211 163 119 82 81 57 | ||||
| RGCGCY | Bsp143II, BstH2I, HaeII, LpnI | 848 152 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 483 242 103 75 68 29 | ||||
| CTNAG | BstDEI, DdeI | 286 264 241 149 60 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 373 327 231 57 12 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 387 376 165 60 12 | ||||
| RGCY | CviJI, CviTI | 255 168 140 60 59 54 53 47 43 30 24 18 15 11 9 8 6 | ||||
| GAATTC | EcoRI, FunII | 1000 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 280 250 141 123 104 102 | ||||
| CATATG | FauNDI, NdeI | 794 159 47 | ||||
| CAC | HindI | 142 141 82 80 72 66 52 52 43 35 34 25 24 22 22 15 14 13 12 11 11 11 6 5 5 3 2 | ||||
| TCNGA | Hpy188I | 335 325 168 152 16 4 | ||||
| GTNAC | MaeIII | 720 160 80 32 8 | ||||
| GCSGC | TauI | 624 376 | ||||
| GCWGC | TseI | 390 385 165 60 | ||||
| Polymorphic_strain_digest (25) | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00033023 | ||||
| Transcript | CBG12008.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG12008.1:c.1057A>G | |||||
| HGVSp | CBP38530.1:p.Lys353Glu | |||||
| cDNA_position | 1057 | |||||
| CDS_position | 1057 | |||||
| Protein_position | 353 | |||||
| Exon_number | 5/10 | |||||
| Codon_change | Aaa/Gaa | |||||
| Amino_acid_change | K/E | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
