WormBase Tree Display for Variation: WBVar00143592

WBVar00143592 Name: Public_name: e912
    Other_name: F59G1.4a.1:c.250-263_947-68del
    HGVSg: CHROMOSOME_II:g.5896964_5902373del
  Sequence_details: SMap: S_parent: Sequence: F59G1
    Flanking_sequences: aggaaggaacaagtcgatcggaaaatttta ttttcacactgggagctagttccaataaaa
    Mapping_target: F59G1
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004403
      WBStrain00006311
      WBStrain00026764
      WBStrain00026863
      WBStrain00027055
      WBStrain00027229
      WBStrain00027586
      WBStrain00040213
      WBStrain00040275
      WBStrain00051497
    Laboratory: CB
    Status: Live
  Affects: Gene (5)
    Transcript: F59G1.6
      F59G1.13 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F59G1.10 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
      F59G1.4a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59G1.4a.1:c.250-263_947-68del
        Intron_number: 4-10/14
        Exon_number: 5-10/15
      F59G1.12 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Exon_number: 1/1
    Interactor (17)
  Isolation: Mutagen
  Genetics: Interpolated_map_position: II -0.855656
    Mapping_data: In_2_point: 40
        777
        4220
      In_multi_point (11)
      In_pos_neg_data: 3708
        4223
        4224
  Description: Phenotype (23)
    Phenotype_not_observed: WBPhenotype:0000207 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Defecation cycle is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000634 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Pumping is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0000637 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: No defects in dauer formation Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
      WBPhenotype:0001233 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: Cell number and nuclear staining is normal Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DAPI staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
      WBPhenotype:0002535 Paper_evidence: WBPaper00031335
        Curator_confirmed: WBPerson2021
        Remark: non-Dyf Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        Variation_effect: Probable_null_via_phenotype: Paper_evidence: WBPaper00031335
            Curator_confirmed: WBPerson2021
        EQ_annotations: Anatomy_term: WBbt:0005666 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005667 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005668 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005665 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0005661 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007807 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
            WBbt:0007808 PATO:0000460 Paper_evidence: WBPaper00031335
                Curator_confirmed: WBPerson2021
        Phenotype_assay: Treatment: DiO staining Paper_evidence: WBPaper00031335
              Curator_confirmed: WBPerson2021
  Reference: WBPaper00031335
    WBPaper00015101
    WBPaper00017778
    WBPaper00032489
    WBPaper00014165
    WBPaper00015201
    WBPaper00016053
    WBPaper00020777
    WBPaper00014384
    WBPaper00020928
    WBPaper00026761
    WBPaper00031252
    WBPaper00000762
    WBPaper00016473
    WBPaper00013667
    WBPaper00014071
    WBPaper00016093
    WBPaper00015978
    WBPaper00010918
    WBPaper00014199
    WBPaper00014557
    WBPaper00015615
    WBPaper00016094
    WBPaper00014480
    WBPaper00014638
    WBPaper00013917
    WBPaper00014335
    WBPaper00020760
    WBPaper00020855
    WBPaper00013918
    WBPaper00001002
    WBPaper00019534
    WBPaper00001144
    WBPaper00056201
    WBPaper00062103
  Method: Deletion_allele