WormBase Tree Display for Variation: WBVar00118126
expand all nodes | collapse all nodes | view schema
| WBVar00118126 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00118126 | ||||
| Other_name | cbs53647 | |||||
| HGVSg | chrI:g.7470442G>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2852 | ||
| Flanking_sequences | cacatcacagaatgtccggtcacttaccattcgttggctgagactgaatt | gaggttgctgttgaatattagcatagaatggagccgatgaatggccaggt | ||||
| Mapping_target | cb25.fpc2852 | |||||
| Type_of_mutation | Substitution | G | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest (25) | |||||
| Polymorphic_strain_digest | GGYRCC | AccB1I, BanI, BshNI, BspT107I, HgiCI | 530 449 21 | |||
| CCGC | AciI | 673 159 143 25 | ||||
| RAATTY | AcsI, ApoI, XapI | 411 321 184 84 | ||||
| GRCGYC | AcyI, BsaHI, BstACI, Hin1I, Hsp92I | 531 446 23 | ||||
| GTAC | AfaI, Csp6I, RsaI | 553 447 | ||||
| AGCT | AluI | 376 237 188 150 49 | ||||
| GAANNNNTTC | Asp700I, MroXI, PdmI, XmnI | 1000 | ||||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 422 410 117 45 6 | ||||
| TTCGAA | AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI | 869 74 57 | ||||
| GGCGCC | BbeI, EgeI, EheI, KasI, Mly113I, NarI, SfoI | 534 466 | ||||
| GATC | BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI | 344 201 142 129 81 80 23 | ||||
| RGCGCY | Bsp143II, BstH2I, HaeII, LpnI | 534 421 45 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 1000 | ||||
| CTNAG | BstDEI, DdeI | 413 195 193 100 99 | ||||
| GCNNNNNNNGC | BstMWI, HpyF10VI, MwoI | 617 195 131 57 | ||||
| GCNGC | BthCI, Fnu4HI, Fsp4HI, ItaI, SatI | 629 186 185 | ||||
| RGCY | CviJI, CviTI | 150 140 128 113 99 76 60 53 43 37 33 26 21 15 6 | ||||
| GAATTC | EcoRI, FunII | 505 495 | ||||
| TCGA | EsaBC3I, TaqI, TthHB8I | 435 427 45 43 30 13 7 | ||||
| CATATG | FauNDI, NdeI | 586 414 | ||||
| CAC | HindI | 137 92 84 79 63 58 50 50 45 38 35 29 25 22 22 22 21 18 15 15 15 13 12 11 10 7 5 3 2 2 | ||||
| TCNGA | Hpy188I | 469 299 152 80 | ||||
| GTNAC | MaeIII | 247 236 160 126 116 65 32 18 | ||||
| GCSGC | TauI | 814 186 | ||||
| GCWGC | TseI | 626 188 186 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00033023 | ||||
| Transcript | CBG12008.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| HGVSc | CBG12008.1:c.1334C>G | |||||
| HGVSp | CBP38530.1:p.Pro445Arg | |||||
| cDNA_position | 1334 | |||||
| CDS_position | 1334 | |||||
| Protein_position | 445 | |||||
| Exon_number | 6/10 | |||||
| Codon_change | cCa/cGa | |||||
| Amino_acid_change | P/R | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
